Gene name: SNZ3
Reference locus (S288C): YFL059W
Gene biotype: protein_coding
Description: Probable pyridoxal 5'-phosphate synthase subunit SNZ3; Member of a stationary phase-induced gene family; expressed in the presence of galactose; transcription of SNZ3 is induced prior to diauxic shift, and also in the absence of thiamin in a Thi2p-dependent manner; forms a coregulated gene pair with SNO3
Top 10 interactors (score): SNO3 (0.999); SNO2 (0.999); SNO1 (0.998); SNZ2 (0.997); SNZ1 (0.964); THI5 (0.814); THI13 (0.806); RBK1 (0.806); PDX3 (0.803); RKI1 (0.8); BUD16 (0.782); BUD17 (0.782); YFR006W (0.755); YFL012W (0.749); RRT5 (0.696); THI2 (0.692); TKL1 (0.656); NQM1 (0.655); THI11 (0.653); YGR017W (0.65)
Homologues (species, bitscore): RSR4 (Arabidopsis thaliana, 373.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000105.1:4327-5223:+ | gene-YFL059W_BG1 | rna-NM_001179908.1_BG1 | cds-NP_116596.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:5866-6762:+ | gene-YFL059W_Bruggeman | rna-NM_001179908.1_Bruggeman | cds-NP_116596.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:16218-17114:+ | gene-YFL059W_CAT1 | rna-NM_001179908.1_CAT1 | cds-NP_116596.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:7884-8780:+ | gene-YFL059W_CBS436 | rna-NM_001179908.1_CBS436 | cds-NP_116596.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:7668-8563:+ | gene-YFL059W_CENPK1137D | rna-NM_001179908.1_CENPK1137D | cds-NP_116596.1_CENPK1137D | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000257.1:769-1358:+ | gene-YFL059W_JAY291 | rna-NM_001179908.1_JAY291 | cds-NP_116596.1_JAY291 | 60.0 | 65.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:6463-7359:+ | gene-YFL059W_MUCL42920 | rna-NM_001179908.1_MUCL42920 | cds-NP_116596.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:686373-687269:- | gene-YFL059W_PE2H3 | rna-NM_001179908.1_PE2H3 | cds-NP_116596.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:1090220-1091116:- | gene-YFL059W_PE2H4 | rna-NM_001179908.1_PE2H4 | cds-NP_116596.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:11363-12259:+ | gene-YFL059W_S288C | rna-NM_001179908.1_S288C | cds-NP_116596.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000165.1:1017-1810:- | gene-YFL059W_SA1 | rna-NM_001179908.1_SA1 | cds-NP_116596.1_SA1 | 77.3 | 87.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:12862-13748:+ | gene-YFL059W_VR1 | rna-NM_001179908.1_VR1 | cds-NP_116596.1_VR1 | 95.4 | 98.3 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:690826-691722:- | gene-YFL059W_ZTW1 | rna-NM_001179908.1_ZTW1 | cds-NP_116596.1_ZTW1 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:15013-15909:+ | gene-YFL059W_Sparadoxus | rna-NM_001179908.1_Sparadoxus | cds-NP_116596.1_Sparadoxus | 90.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |