Gene name: SNX41
Reference locus (S288C): YDR425W
Gene biotype: protein_coding
Description: Sorting nexin; involved in the retrieval of late-Golgi SNAREs from the post-Golgi endosome to the trans-Golgi network; interacts with Snx4p
Top 10 interactors (score): SNX4 (0.998); VPS35 (0.935); VPS29 (0.918); SNX3 (0.878); ATG20 (0.866); PEP8 (0.827); VPS17 (0.819); VPS5 (0.815); ATG26 (0.804); SNC1 (0.784); MVP1 (0.721); RTT10 (0.61); CUE5 (0.604); PEP1 (0.598); GOS1 (0.588); TLG2 (0.584); ATG27 (0.565); RVS167 (0.565); BIO3 (0.534); CMR3 (0.525)
Homologues (species, bitscore): SNX4 (Homo sapiens, 61.6); Snx4 (Mus musculus, 65.1); snx4 (Danio rerio, 57.8); snx4 (Xenopus tropicalis, 67.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1260330-1262207:+ | gene-YDR425W_AKU4011 | rna-NM_001180733.1_AKU4011 | cds-NP_010713.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:138671-140548:+ | gene-YDR425W_BG1 | rna-NM_001180733.1_BG1 | cds-NP_010713.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1290721-1292598:+ | gene-YDR425W_Bruggeman | rna-NM_001180733.1_Bruggeman | cds-NP_010713.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1268915-1270792:+ | gene-YDR425W_CAT1 | rna-NM_001180733.1_CAT1 | cds-NP_010713.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1254659-1256536:+ | gene-YDR425W_CBS1585 | rna-NM_001180733.1_CBS1585 | cds-NP_010713.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1273995-1275872:+ | gene-YDR425W_CBS436 | rna-NM_001180733.1_CBS436 | cds-NP_010713.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1250625-1252502:+ | gene-YDR425W_CBS6412 | rna-NM_001180733.1_CBS6412 | cds-NP_010713.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1272774-1274651:+ | gene-YDR425W_CBS6413 | rna-NM_001180733.1_CBS6413 | cds-NP_010713.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1318732-1320609:+ | gene-YDR425W_CENPK1137D | rna-NM_001180733.1_CENPK1137D | cds-NP_010713.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1263913-1265790:+ | gene-YDR425W_EthanolRed | rna-NM_001180733.1_EthanolRed | cds-NP_010713.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1267220-1269097:+ | gene-YDR425W_FaliES1 | rna-NM_001180733.1_FaliES1 | cds-NP_010713.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000263.1:11497-13374:+ | gene-YDR425W_JAY291 | rna-NM_001180733.1_JAY291 | cds-NP_010713.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1274363-1276240:+ | gene-YDR425W_MUCL30387 | rna-NM_001180733.1_MUCL30387 | cds-NP_010713.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1256299-1258176:+ | gene-YDR425W_MUCL30388 | rna-NM_001180733.1_MUCL30388 | cds-NP_010713.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1246151-1248028:+ | gene-YDR425W_MUCL39482 | rna-NM_001180733.1_MUCL39482 | cds-NP_010713.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1188555-1190432:+ | gene-YDR425W_MUCL42920 | rna-NM_001180733.1_MUCL42920 | cds-NP_010713.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1319987-1321864:+ | gene-YDR425W_NCIM3186 | rna-NM_001180733.1_NCIM3186 | cds-NP_010713.1_NCIM3186 | 94.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1259915-1261792:+ | gene-YDR425W_NCYC1407 | rna-NM_001180733.1_NCYC1407 | cds-NP_010713.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1270740-1272617:+ | gene-YDR425W_PE2H3 | rna-NM_001180733.1_PE2H3 | cds-NP_010713.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1276308-1278185:+ | gene-YDR425W_PE2H4 | rna-NM_001180733.1_PE2H4 | cds-NP_010713.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1320064-1321941:+ | gene-YDR425W_S288C | rna-NM_001180733.1_S288C | cds-NP_010713.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000082.1:35280-37157:- | gene-YDR425W_SA1 | rna-NM_001180733.1_SA1 | cds-NP_010713.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1271482-1273359:+ | gene-YDR425W_ThermosaccDry | rna-NM_001180733.1_ThermosaccDry | cds-NP_010713.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1286702-1288579:+ | gene-YDR425W_VR1 | rna-NM_001180733.1_VR1 | cds-NP_010713.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:314126-316003:+ | gene-YDR425W_ZTW1 | rna-NM_001180733.1_ZTW1 | cds-NP_010713.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1267870-1269747:+ | gene-YDR425W_Sparadoxus | rna-NM_001180733.1_Sparadoxus | cds-NP_010713.1_Sparadoxus | 89.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |