Gene name: SNX4
Reference locus (S288C): YJL036W
Gene biotype: protein_coding
Description: Sorting nexin; involved in retrieval of late-Golgi SNAREs from post-Golgi endosomes to the trans-Golgi network and in cytoplasm to vacuole transport; contains a PX phosphoinositide-binding domain; forms complexes with Snx41p and with Atg20p
Top 10 interactors (score): ATG20 (0.999); SNX41 (0.998); ATG11 (0.983); ATG1 (0.969); VPS35 (0.96); ATG8 (0.952); ATG21 (0.951); ATG18 (0.945); VPS17 (0.945); SNC1 (0.94); SNX3 (0.94); ATG26 (0.931); ATG9 (0.924); TLG2 (0.917); ATG7 (0.915); PEP8 (0.911); VPS29 (0.911); ATG17 (0.906); ATG29 (0.904); ATG3 (0.902)
Homologues (species, bitscore): SNX30 (Homo sapiens, 110.5); Snx30 (Mus musculus, 113.2); snx30 (Danio rerio, 114.0); snx30 (Xenopus tropicalis, 115.2); Snx1 (Drosophila melanogaster, 83.6); lst-4 (Caenorhabditis elegans, 70.5); SNX1 (Arabidopsis thaliana, 96.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:361782-363053:+ | gene-YJL036W_AKU4011 | rna-NM_001181470.1_AKU4011 | cds-NP_012498.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:251029-252300:- | gene-YJL036W_BG1 | rna-NM_001181470.1_BG1 | cds-NP_012498.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:375973-377244:+ | gene-YJL036W_Bruggeman | rna-NM_001181470.1_Bruggeman | cds-NP_012498.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:379932-381203:+ | gene-YJL036W_CAT1 | rna-NM_001181470.1_CAT1 | cds-NP_012498.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:373446-374717:+ | gene-YJL036W_CBS1585 | rna-NM_001181470.1_CBS1585 | cds-NP_012498.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:391803-393074:+ | gene-YJL036W_CBS436 | rna-NM_001181470.1_CBS436 | cds-NP_012498.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:362044-363315:+ | gene-YJL036W_CBS6412 | rna-NM_001181470.1_CBS6412 | cds-NP_012498.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:363924-365195:+ | gene-YJL036W_CBS6413 | rna-NM_001181470.1_CBS6413 | cds-NP_012498.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:361251-362522:+ | gene-YJL036W_CENPK1137D | rna-NM_001181470.1_CENPK1137D | cds-NP_012498.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:364998-366269:+ | gene-YJL036W_EthanolRed | rna-NM_001181470.1_EthanolRed | cds-NP_012498.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:377446-378717:+ | gene-YJL036W_FaliES1 | rna-NM_001181470.1_FaliES1 | cds-NP_012498.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000200.1:36711-37982:- | gene-YJL036W_JAY291 | rna-NM_001181470.1_JAY291 | cds-NP_012498.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:376214-377485:+ | gene-YJL036W_MUCL30387 | rna-NM_001181470.1_MUCL30387 | cds-NP_012498.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:372362-373633:+ | gene-YJL036W_MUCL30388 | rna-NM_001181470.1_MUCL30388 | cds-NP_012498.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:366770-368041:+ | gene-YJL036W_MUCL39482 | rna-NM_001181470.1_MUCL39482 | cds-NP_012498.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:372105-373376:+ | gene-YJL036W_MUCL42920 | rna-NM_001181470.1_MUCL42920 | cds-NP_012498.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:378804-380075:+ | gene-YJL036W_NCIM3186 | rna-NM_001181470.1_NCIM3186 | cds-NP_012498.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:364719-365990:+ | gene-YJL036W_NCYC1407 | rna-NM_001181470.1_NCYC1407 | cds-NP_012498.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:376796-378067:+ | gene-YJL036W_PE2H3 | rna-NM_001181470.1_PE2H3 | cds-NP_012498.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:376440-377711:+ | gene-YJL036W_PE2H4 | rna-NM_001181470.1_PE2H4 | cds-NP_012498.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:378825-380096:+ | gene-YJL036W_S288C | rna-NM_001181470.1_S288C | cds-NP_012498.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:174326-175597:+ | gene-YJL036W_SA1 | rna-NM_001181470.1_SA1 | cds-NP_012498.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:371107-372378:+ | gene-YJL036W_ThermosaccDry | rna-NM_001181470.1_ThermosaccDry | cds-NP_012498.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:372952-374223:+ | gene-YJL036W_VR1 | rna-NM_001181470.1_VR1 | cds-NP_012498.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:351771-353042:+ | gene-YJL036W_ZTW1 | rna-NM_001181470.1_ZTW1 | cds-NP_012498.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:377046-378317:+ | gene-YJL036W_Sparadoxus | rna-NM_001181470.1_Sparadoxus | cds-NP_012498.1_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |