Gene name: SNX3
Reference locus (S288C): YOR357C
Gene biotype: protein_coding
Description: Sorting nexin for late-Golgi enzymes; required to maintain late-Golgi resident enzymes in their proper location by recycling molecules from the prevacuolar compartment; contains a PX domain and sequence similarity to human Snx3p
Top 10 interactors (score): PEP8 (0.999); VPS35 (0.999); VPS29 (0.998); VPS5 (0.988); VPS27 (0.979); VPS17 (0.973); MVP1 (0.945); SNX4 (0.94); MON1 (0.926); PEP1 (0.898); SNX41 (0.878); RVS167 (0.874); YPT7 (0.874); FTR1 (0.856); STE13 (0.841); ATG20 (0.816); FET3 (0.808); MDM1 (0.804); GYP6 (0.767); VAM7 (0.754)
Homologues (species, bitscore): SNX3 (Homo sapiens, 99.8); Snx3 (Mus musculus, 99.8); snx3 (Danio rerio, 99.4); snx3 (Xenopus tropicalis, 94.0); Snx3 (Drosophila melanogaster, 98.6); snx-3 (Caenorhabditis elegans, 97.4); SNX1 (Arabidopsis thaliana, 62.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:995808-996296:- | gene-YOR357C_AKU4011 | rna-NM_001183777.3_AKU4011 | cds-NP_015002.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000078.1:32984-33472:- | gene-YOR357C_BG1 | rna-NM_001183777.3_BG1 | cds-NP_015002.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:980625-981113:- | gene-YOR357C_Bruggeman | rna-NM_001183777.3_Bruggeman | cds-NP_015002.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:980453-980941:- | gene-YOR357C_CAT1 | rna-NM_001183777.3_CAT1 | cds-NP_015002.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:980218-980706:- | gene-YOR357C_CBS1585 | rna-NM_001183777.3_CBS1585 | cds-NP_015002.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:975031-975519:- | gene-YOR357C_CBS436 | rna-NM_001183777.3_CBS436 | cds-NP_015002.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:209520-210008:- | gene-YOR357C_CBS6412 | rna-NM_001183777.3_CBS6412 | cds-NP_015002.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:984491-984979:- | gene-YOR357C_CBS6413 | rna-NM_001183777.3_CBS6413 | cds-NP_015002.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:1009046-1009534:- | gene-YOR357C_CENPK1137D | rna-NM_001183777.3_CENPK1137D | cds-NP_015002.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:224517-225005:- | gene-YOR357C_EthanolRed | rna-NM_001183777.3_EthanolRed | cds-NP_015002.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:977346-977834:- | gene-YOR357C_FaliES1 | rna-NM_001183777.3_FaliES1 | cds-NP_015002.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:27840-28328:+ | gene-YOR357C_JAY291 | rna-NM_001183777.3_JAY291 | cds-NP_015002.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:989953-990441:- | gene-YOR357C_MUCL30387 | rna-NM_001183777.3_MUCL30387 | cds-NP_015002.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:997965-998453:- | gene-YOR357C_MUCL30388 | rna-NM_001183777.3_MUCL30388 | cds-NP_015002.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:986753-987241:- | gene-YOR357C_MUCL39482 | rna-NM_001183777.3_MUCL39482 | cds-NP_015002.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:994359-994847:- | gene-YOR357C_MUCL42920 | rna-NM_001183777.3_MUCL42920 | cds-NP_015002.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:1009113-1009601:- | gene-YOR357C_NCIM3186 | rna-NM_001183777.3_NCIM3186 | cds-NP_015002.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:987761-988249:- | gene-YOR357C_NCYC1407 | rna-NM_001183777.3_NCYC1407 | cds-NP_015002.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:983021-983509:- | gene-YOR357C_PE2H3 | rna-NM_001183777.3_PE2H3 | cds-NP_015002.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:999372-999860:- | gene-YOR357C_PE2H4 | rna-NM_001183777.3_PE2H4 | cds-NP_015002.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:1009224-1009712:- | gene-YOR357C_S288C | rna-NM_001183777.3_S288C | cds-NP_015002.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:113755-114243:- | gene-YOR357C_SA1 | rna-NM_001183777.3_SA1 | cds-NP_015002.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:976516-977004:- | gene-YOR357C_ThermosaccDry | rna-NM_001183777.3_ThermosaccDry | cds-NP_015002.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:1037771-1038259:- | gene-YOR357C_VR1 | rna-NM_001183777.3_VR1 | cds-NP_015002.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:709246-709734:- | gene-YOR357C_ZTW1 | rna-NM_001183777.3_ZTW1 | cds-NP_015002.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:982707-983195:- | gene-YOR357C_Sparadoxus | rna-NM_001183777.3_Sparadoxus | cds-NP_015002.3_Sparadoxus | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |