Gene name: SNU71
Reference locus (S288C): YGR013W
Gene biotype: protein_coding
Description: U1 small nuclear ribonucleoprotein component SNU71; Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counterpart; Belongs to the SNU71 family
Top 10 interactors (score): PRP39 (0.999); SMB1 (0.999); SNU66 (0.999); LUC7 (0.999); PRP40 (0.999); SNU56 (0.999); NAM8 (0.999); MUD1 (0.999); SNP1 (0.999); PRP42 (0.999); LEA1 (0.999); YHC1 (0.999); HSH155 (0.998); SMD3 (0.998); SMD1 (0.997); RSE1 (0.996); SMX3 (0.996); CUS1 (0.996); SMD2 (0.995); SMX2 (0.995)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:516602-518464:+ | gene-YGR013W_AKU4011 | rna-NM_001181142.1_AKU4011 | cds-NP_011527.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:57649-59511:- | gene-YGR013W_BG1 | rna-NM_001181142.1_BG1 | cds-NP_011527.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:517581-519443:+ | gene-YGR013W_Bruggeman | rna-NM_001181142.1_Bruggeman | cds-NP_011527.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:516360-518222:+ | gene-YGR013W_CAT1 | rna-NM_001181142.1_CAT1 | cds-NP_011527.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:518095-519957:+ | gene-YGR013W_CBS1585 | rna-NM_001181142.1_CBS1585 | cds-NP_011527.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:512454-514316:+ | gene-YGR013W_CBS436 | rna-NM_001181142.1_CBS436 | cds-NP_011527.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:510692-512554:+ | gene-YGR013W_CBS6412 | rna-NM_001181142.1_CBS6412 | cds-NP_011527.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:514771-516633:+ | gene-YGR013W_CBS6413 | rna-NM_001181142.1_CBS6413 | cds-NP_011527.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:514372-516234:+ | gene-YGR013W_CENPK1137D | rna-NM_001181142.1_CENPK1137D | cds-NP_011527.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:504968-506830:+ | gene-YGR013W_EthanolRed | rna-NM_001181142.1_EthanolRed | cds-NP_011527.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:508218-510080:+ | gene-YGR013W_FaliES1 | rna-NM_001181142.1_FaliES1 | cds-NP_011527.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000020.1:46853-48715:+ | gene-YGR013W_JAY291 | rna-NM_001181142.1_JAY291 | cds-NP_011527.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:514807-516669:+ | gene-YGR013W_MUCL30387 | rna-NM_001181142.1_MUCL30387 | cds-NP_011527.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:517365-519227:+ | gene-YGR013W_MUCL30388 | rna-NM_001181142.1_MUCL30388 | cds-NP_011527.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:513914-515776:+ | gene-YGR013W_MUCL39482 | rna-NM_001181142.1_MUCL39482 | cds-NP_011527.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:523341-525203:+ | gene-YGR013W_MUCL42920 | rna-NM_001181142.1_MUCL42920 | cds-NP_011527.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:514554-516416:+ | gene-YGR013W_NCIM3186 | rna-NM_001181142.1_NCIM3186 | cds-NP_011527.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:507932-509794:+ | gene-YGR013W_NCYC1407 | rna-NM_001181142.1_NCYC1407 | cds-NP_011527.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:510621-512483:+ | gene-YGR013W_PE2H3 | rna-NM_001181142.1_PE2H3 | cds-NP_011527.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:515671-517533:+ | gene-YGR013W_PE2H4 | rna-NM_001181142.1_PE2H4 | cds-NP_011527.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:514554-516416:+ | gene-YGR013W_S288C | rna-NM_001181142.1_S288C | cds-NP_011527.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:39184-41046:- | gene-YGR013W_SA1 | rna-NM_001181142.1_SA1 | cds-NP_011527.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:527544-529406:+ | gene-YGR013W_ThermosaccDry | rna-NM_001181142.1_ThermosaccDry | cds-NP_011527.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:617839-619701:+ | gene-YGR013W_VR1 | rna-NM_001181142.1_VR1 | cds-NP_011527.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:506142-508004:+ | gene-YGR013W_ZTW1 | rna-NM_001181142.1_ZTW1 | cds-NP_011527.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:515637-517499:+ | gene-YGR013W_Sparadoxus | rna-NM_001181142.1_Sparadoxus | cds-NP_011527.1_Sparadoxus | 88.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |