Gene name: SNU66
Reference locus (S288C): YOR308C
Gene biotype: protein_coding
Description: 66 kDa U4/U6.U5 small nuclear ribonucleoprotein component; Component of the U4/U6.U5 snRNP complex; involved in pre-mRNA splicing via spliceosome; also required for pre-5S rRNA processing and may act in concert with Rnh70p; has homology to human SART-1
Top 10 interactors (score): MUD1 (0.999); NAM8 (0.999); STO1 (0.999); PRP38 (0.999); RSE1 (0.999); PRP6 (0.999); DIB1 (0.999); SNU71 (0.999); BRR2 (0.999); SNU114 (0.999); SMX3 (0.999); SMX2 (0.999); SNU23 (0.999); LEA1 (0.999); PRP19 (0.999); HUB1 (0.999); LSM2 (0.999); LSM8 (0.999); PRP8 (0.999); CUS1 (0.999)
Homologues (species, bitscore): SART1 (Homo sapiens, 53.1); Sart1 (Mus musculus, 53.1); sart1 (Danio rerio, 62.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:885102-886862:- | gene-YOR308C_AKU4011 | rna-NM_001183728.3_AKU4011 | cds-NP_014953.3_AKU4011 | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:287118-288878:- | gene-YOR308C_BG1 | rna-NM_001183728.3_BG1 | cds-NP_014953.3_BG1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:870518-872277:- | gene-YOR308C_Bruggeman | rna-NM_001183728.3_Bruggeman | cds-NP_014953.3_Bruggeman | 99.6 | 99.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:871236-872996:- | gene-YOR308C_CAT1 | rna-NM_001183728.3_CAT1 | cds-NP_014953.3_CAT1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:868913-870673:- | gene-YOR308C_CBS1585 | rna-NM_001183728.3_CBS1585 | cds-NP_014953.3_CBS1585 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:866756-868519:- | gene-YOR308C_CBS436 | rna-NM_001183728.3_CBS436 | cds-NP_014953.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:864630-866390:- | gene-YOR308C_CBS6412 | rna-NM_001183728.3_CBS6412 | cds-NP_014953.3_CBS6412 | 99.3 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:873758-875518:- | gene-YOR308C_CBS6413 | rna-NM_001183728.3_CBS6413 | cds-NP_014953.3_CBS6413 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:894400-896163:- | gene-YOR308C_CENPK1137D | rna-NM_001183728.3_CENPK1137D | cds-NP_014953.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:861011-862771:- | gene-YOR308C_EthanolRed | rna-NM_001183728.3_EthanolRed | cds-NP_014953.3_EthanolRed | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:866634-868394:- | gene-YOR308C_FaliES1 | rna-NM_001183728.3_FaliES1 | cds-NP_014953.3_FaliES1 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:134858-136618:+ | gene-YOR308C_JAY291 | rna-NM_001183728.3_JAY291 | cds-NP_014953.3_JAY291 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:874762-876525:- | gene-YOR308C_MUCL30387 | rna-NM_001183728.3_MUCL30387 | cds-NP_014953.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:882764-884524:- | gene-YOR308C_MUCL30388 | rna-NM_001183728.3_MUCL30388 | cds-NP_014953.3_MUCL30388 | 99.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:875458-877218:- | gene-YOR308C_MUCL39482 | rna-NM_001183728.3_MUCL39482 | cds-NP_014953.3_MUCL39482 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:884945-886705:- | gene-YOR308C_MUCL42920 | rna-NM_001183728.3_MUCL42920 | cds-NP_014953.3_MUCL42920 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:894513-896276:- | gene-YOR308C_NCIM3186 | rna-NM_001183728.3_NCIM3186 | cds-NP_014953.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:876459-878219:- | gene-YOR308C_NCYC1407 | rna-NM_001183728.3_NCYC1407 | cds-NP_014953.3_NCYC1407 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:874698-876458:- | gene-YOR308C_PE2H3 | rna-NM_001183728.3_PE2H3 | cds-NP_014953.3_PE2H3 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:891050-892810:- | gene-YOR308C_PE2H4 | rna-NM_001183728.3_PE2H4 | cds-NP_014953.3_PE2H4 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:894624-896387:- | gene-YOR308C_S288C | rna-NM_001183728.3_S288C | cds-NP_014953.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:4949-6709:- | gene-YOR308C_SA1 | rna-NM_001183728.3_SA1 | cds-NP_014953.3_SA1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:865817-867577:- | gene-YOR308C_ThermosaccDry | rna-NM_001183728.3_ThermosaccDry | cds-NP_014953.3_ThermosaccDry | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:929120-930880:- | gene-YOR308C_VR1 | rna-NM_001183728.3_VR1 | cds-NP_014953.3_VR1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:598697-600456:- | gene-YOR308C_ZTW1 | rna-NM_001183728.3_ZTW1 | cds-NP_014953.3_ZTW1 | 99.2 | 99.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:872895-874661:- | gene-YOR308C_Sparadoxus | rna-NM_001183728.3_Sparadoxus | cds-NP_014953.3_Sparadoxus | 81.8 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |