Gene name: SNU56
Reference locus (S288C): YDR240C
Gene biotype: protein_coding
Description: 56 kDa U1 small nuclear ribonucleoprotein component; Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counterpart; interacts with mRNA in commitment complex
Top 10 interactors (score): NAM8 (0.999); LUC7 (0.999); MUD1 (0.999); YHC1 (0.999); PRP39 (0.999); LEA1 (0.999); SNU66 (0.999); PRP42 (0.999); SNU71 (0.999); PRP40 (0.999); SNP1 (0.999); SMD1 (0.998); CBC2 (0.998); SMB1 (0.998); SMD3 (0.997); STO1 (0.993); HSH155 (0.993); RSE1 (0.993); SMX2 (0.992); CUS1 (0.991)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:900350-901828:- | gene-YDR240C_AKU4011 | rna-NM_001180548.1_AKU4011 | cds-NP_010526.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:223980-225458:+ | gene-YDR240C_BG1 | rna-NM_001180548.1_BG1 | cds-NP_010526.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:932676-934154:- | gene-YDR240C_Bruggeman | rna-NM_001180548.1_Bruggeman | cds-NP_010526.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:919964-921442:- | gene-YDR240C_CAT1 | rna-NM_001180548.1_CAT1 | cds-NP_010526.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:890699-892177:- | gene-YDR240C_CBS1585 | rna-NM_001180548.1_CBS1585 | cds-NP_010526.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:919728-921206:- | gene-YDR240C_CBS436 | rna-NM_001180548.1_CBS436 | cds-NP_010526.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:887459-888937:- | gene-YDR240C_CBS6412 | rna-NM_001180548.1_CBS6412 | cds-NP_010526.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:918061-919539:- | gene-YDR240C_CBS6413 | rna-NM_001180548.1_CBS6413 | cds-NP_010526.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:942603-944081:- | gene-YDR240C_CENPK1137D | rna-NM_001180548.1_CENPK1137D | cds-NP_010526.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:901082-902560:- | gene-YDR240C_EthanolRed | rna-NM_001180548.1_EthanolRed | cds-NP_010526.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:909284-910762:- | gene-YDR240C_FaliES1 | rna-NM_001180548.1_FaliES1 | cds-NP_010526.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000348.1:830-2308:+ | gene-YDR240C_JAY291 | rna-NM_001180548.1_JAY291 | cds-NP_010526.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:918574-920052:- | gene-YDR240C_MUCL30387 | rna-NM_001180548.1_MUCL30387 | cds-NP_010526.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:906604-908082:- | gene-YDR240C_MUCL30388 | rna-NM_001180548.1_MUCL30388 | cds-NP_010526.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:892104-893582:- | gene-YDR240C_MUCL39482 | rna-NM_001180548.1_MUCL39482 | cds-NP_010526.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:831378-832856:- | gene-YDR240C_MUCL42920 | rna-NM_001180548.1_MUCL42920 | cds-NP_010526.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:943597-945075:- | gene-YDR240C_NCIM3186 | rna-NM_001180548.1_NCIM3186 | cds-NP_010526.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:895772-897250:- | gene-YDR240C_NCYC1407 | rna-NM_001180548.1_NCYC1407 | cds-NP_010526.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:912031-913509:- | gene-YDR240C_PE2H3 | rna-NM_001180548.1_PE2H3 | cds-NP_010526.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:917308-918786:- | gene-YDR240C_PE2H4 | rna-NM_001180548.1_PE2H4 | cds-NP_010526.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:943674-945152:- | gene-YDR240C_S288C | rna-NM_001180548.1_S288C | cds-NP_010526.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:149868-151346:- | gene-YDR240C_SA1 | rna-NM_001180548.1_SA1 | cds-NP_010526.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:907438-908916:- | gene-YDR240C_ThermosaccDry | rna-NM_001180548.1_ThermosaccDry | cds-NP_010526.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:922631-924109:- | gene-YDR240C_VR1 | rna-NM_001180548.1_VR1 | cds-NP_010526.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:170120-171598:- | gene-YDR240C_ZTW1 | rna-NM_001180548.1_ZTW1 | cds-NP_010526.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:912292-913770:- | gene-YDR240C_Sparadoxus | rna-NM_001180548.1_Sparadoxus | cds-NP_010526.1_Sparadoxus | 87.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |