Gene name: SNU23
Reference locus (S288C): YDL098C
Gene biotype: protein_coding
Description: 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component; Component of the U4/U6.U5 snRNP complex; involved in mRNA splicing via spliceosome
Top 10 interactors (score): LSM2 (0.999); PRP3 (0.999); LSM3 (0.999); LSM4 (0.999); SMD3 (0.999); LSM6 (0.999); BRR2 (0.999); DIB1 (0.999); LSM7 (0.999); SNU66 (0.999); SPP381 (0.999); SNU114 (0.998); PRP38 (0.998); PRP4 (0.998); PRP6 (0.998); SNU13 (0.997); SMB1 (0.997); PRP31 (0.997); LSM5 (0.997); SMD2 (0.995)
Homologues (species, bitscore): zmat2 (Danio rerio, 51.2); ZK686.4 (Caenorhabditis elegans, 52.8); AT3G05760 (Arabidopsis thaliana, 53.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:269189-269773:- | gene-YDL098C_AKU4011 | rna-NM_001180157.1_AKU4011 | cds-NP_010185.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:280169-280753:+ | gene-YDL098C_BG1 | rna-NM_001180157.1_BG1 | cds-NP_010185.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:286614-287198:- | gene-YDL098C_Bruggeman | rna-NM_001180157.1_Bruggeman | cds-NP_010185.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:283351-283935:- | gene-YDL098C_CAT1 | rna-NM_001180157.1_CAT1 | cds-NP_010185.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:267461-268045:- | gene-YDL098C_CBS1585 | rna-NM_001180157.1_CBS1585 | cds-NP_010185.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:284129-284713:- | gene-YDL098C_CBS436 | rna-NM_001180157.1_CBS436 | cds-NP_010185.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:265888-266472:- | gene-YDL098C_CBS6412 | rna-NM_001180157.1_CBS6412 | cds-NP_010185.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:285513-286097:- | gene-YDL098C_CBS6413 | rna-NM_001180157.1_CBS6413 | cds-NP_010185.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:283399-283983:- | gene-YDL098C_CENPK1137D | rna-NM_001180157.1_CENPK1137D | cds-NP_010185.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:280223-280807:- | gene-YDL098C_EthanolRed | rna-NM_001180157.1_EthanolRed | cds-NP_010185.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:286195-286779:- | gene-YDL098C_FaliES1 | rna-NM_001180157.1_FaliES1 | cds-NP_010185.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:56246-56830:- | gene-YDL098C_JAY291 | rna-NM_001180157.1_JAY291 | cds-NP_010185.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:284377-284961:- | gene-YDL098C_MUCL30387 | rna-NM_001180157.1_MUCL30387 | cds-NP_010185.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:275152-275736:- | gene-YDL098C_MUCL30388 | rna-NM_001180157.1_MUCL30388 | cds-NP_010185.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:268565-269149:- | gene-YDL098C_MUCL39482 | rna-NM_001180157.1_MUCL39482 | cds-NP_010185.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:190333-190917:- | gene-YDL098C_MUCL42920 | rna-NM_001180157.1_MUCL42920 | cds-NP_010185.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:284504-285088:- | gene-YDL098C_NCIM3186 | rna-NM_001180157.1_NCIM3186 | cds-NP_010185.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:268581-269165:- | gene-YDL098C_NCYC1407 | rna-NM_001180157.1_NCYC1407 | cds-NP_010185.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:275363-275947:- | gene-YDL098C_PE2H3 | rna-NM_001180157.1_PE2H3 | cds-NP_010185.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:275365-275949:- | gene-YDL098C_PE2H4 | rna-NM_001180157.1_PE2H4 | cds-NP_010185.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:284581-285165:- | gene-YDL098C_S288C | rna-NM_001180157.1_S288C | cds-NP_010185.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:149757-150341:+ | gene-YDL098C_SA1 | rna-NM_001180157.1_SA1 | cds-NP_010185.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:285706-286290:- | gene-YDL098C_ThermosaccDry | rna-NM_001180157.1_ThermosaccDry | cds-NP_010185.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:287783-288367:- | gene-YDL098C_VR1 | rna-NM_001180157.1_VR1 | cds-NP_010185.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:283630-284214:- | gene-YDL098C_ZTW1 | rna-NM_001180157.1_ZTW1 | cds-NP_010185.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:285765-286349:- | gene-YDL098C_Sparadoxus | rna-NM_001180157.1_Sparadoxus | cds-NP_010185.1_Sparadoxus | 85.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |