Gene name: SNU13
Reference locus (S288C): YEL026W
Gene biotype: protein_coding
Description: 13 kDa ribonucleoprotein-associated protein; RNA binding protein; part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein; Belongs to the eukaryotic ribosomal protein eL8 family
Top 10 interactors (score): SMD3 (0.999); LSM5 (0.999); NOP1 (0.999); IMP4 (0.999); NOP58 (0.999); NHP2 (0.999); BRR2 (0.999); NIP7 (0.999); RRP9 (0.999); SMX2 (0.999); UTP15 (0.999); SMX3 (0.999); SNU114 (0.999); NAN1 (0.999); NOP56 (0.999); UTP5 (0.999); IMP3 (0.999); NOP15 (0.999); SNU66 (0.999); PRP6 (0.999)
Homologues (species, bitscore): NHP2L1 (Homo sapiens, 189.1); Nhp2l1 (Mus musculus, 189.1); nhp2l1a (Danio rerio, 191.0); nhp2l1 (Xenopus tropicalis, 187.6); hoip (Drosophila melanogaster, 183.3); M28.5 (Caenorhabditis elegans, 197.2); AT4G22380 (Arabidopsis thaliana, 195.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:95977-96357:+ | gene-YEL026W_AKU4011 | rna-NM_001178841.1_AKU4011 | cds-NP_010888.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:329602-329982:- | gene-YEL026W_BG1 | rna-NM_001178841.1_BG1 | cds-NP_010888.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:101379-101759:+ | gene-YEL026W_Bruggeman | rna-NM_001178841.1_Bruggeman | cds-NP_010888.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:98155-98535:+ | gene-YEL026W_CAT1 | rna-NM_001178841.1_CAT1 | cds-NP_010888.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:95918-96298:+ | gene-YEL026W_CBS1585 | rna-NM_001178841.1_CBS1585 | cds-NP_010888.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:97552-97932:+ | gene-YEL026W_CBS436 | rna-NM_001178841.1_CBS436 | cds-NP_010888.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:96197-96577:+ | gene-YEL026W_CBS6412 | rna-NM_001178841.1_CBS6412 | cds-NP_010888.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:100810-101190:+ | gene-YEL026W_CBS6413 | rna-NM_001178841.1_CBS6413 | cds-NP_010888.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:99802-100182:+ | gene-YEL026W_CENPK1137D | rna-NM_001178841.1_CENPK1137D | cds-NP_010888.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:96308-96688:+ | gene-YEL026W_EthanolRed | rna-NM_001178841.1_EthanolRed | cds-NP_010888.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:96567-96947:+ | gene-YEL026W_FaliES1 | rna-NM_001178841.1_FaliES1 | cds-NP_010888.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000398.1:15453-15833:+ | gene-YEL026W_JAY291 | rna-NM_001178841.1_JAY291 | cds-NP_010888.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:100232-100612:+ | gene-YEL026W_MUCL30387 | rna-NM_001178841.1_MUCL30387 | cds-NP_010888.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:96204-96584:+ | gene-YEL026W_MUCL30388 | rna-NM_001178841.1_MUCL30388 | cds-NP_010888.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:95287-95667:+ | gene-YEL026W_MUCL39482 | rna-NM_001178841.1_MUCL39482 | cds-NP_010888.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:99918-100298:+ | gene-YEL026W_MUCL42920 | rna-NM_001178841.1_MUCL42920 | cds-NP_010888.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:101942-102322:+ | gene-YEL026W_NCIM3186 | rna-NM_001178841.1_NCIM3186 | cds-NP_010888.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:100382-100762:+ | gene-YEL026W_NCYC1407 | rna-NM_001178841.1_NCYC1407 | cds-NP_010888.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:104419-104799:+ | gene-YEL026W_PE2H3 | rna-NM_001178841.1_PE2H3 | cds-NP_010888.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:100334-100714:+ | gene-YEL026W_PE2H4 | rna-NM_001178841.1_PE2H4 | cds-NP_010888.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:101943-102323:+ | gene-YEL026W_S288C | rna-NM_001178841.1_S288C | cds-NP_010888.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:140912-141292:- | gene-YEL026W_SA1 | rna-NM_001178841.1_SA1 | cds-NP_010888.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:96972-97352:+ | gene-YEL026W_ThermosaccDry | rna-NM_001178841.1_ThermosaccDry | cds-NP_010888.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:96502-96882:+ | gene-YEL026W_VR1 | rna-NM_001178841.1_VR1 | cds-NP_010888.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:95329-95709:+ | gene-YEL026W_ZTW1 | rna-NM_001178841.1_ZTW1 | cds-NP_010888.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:98499-98879:+ | gene-YEL026W_Sparadoxus | rna-NM_001178841.1_Sparadoxus | cds-NP_010888.1_Sparadoxus | 97.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |