Gene name: SNU114
Reference locus (S288C): YKL173W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor SNU114; GTPase component of U5 snRNP involved in mRNA splicing via spliceosome; binds directly to U5 snRNA; proposed to be involved in conformational changes of the spliceosome; similarity to ribosomal translocation factor EF-2
Top 10 interactors (score): PRP19 (0.999); CWC15 (0.999); AAR2 (0.999); LEA1 (0.999); BRR2 (0.999); CUS1 (0.999); PRP8 (0.999); SYF2 (0.999); LSM2 (0.999); LSM8 (0.999); RSE1 (0.999); CEF1 (0.999); PRP6 (0.999); SMD2 (0.999); SNU66 (0.999); PRP28 (0.999); CWC2 (0.999); SMX2 (0.999); SMX3 (0.999); PRP43 (0.999)
Homologues (species, bitscore): EFTUD2 (Homo sapiens, 540.4); Eftud2 (Mus musculus, 538.1); eftud2 (Danio rerio, 548.5); eftud2 (Xenopus tropicalis, 524.6); CG4849 (Drosophila melanogaster, 550.8); eftu-2 (Caenorhabditis elegans, 523.5); MEE5 (Arabidopsis thaliana, 533.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:109372-112398:+ | gene-YKL173W_AKU4011 | rna-NM_001179739.1_AKU4011 | cds-NP_012748.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:85930-88956:+ | gene-YKL173W_BG1 | rna-NM_001179739.1_BG1 | cds-NP_012748.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:126762-129788:+ | gene-YKL173W_Bruggeman | rna-NM_001179739.1_Bruggeman | cds-NP_012748.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:121725-124751:+ | gene-YKL173W_CAT1 | rna-NM_001179739.1_CAT1 | cds-NP_012748.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:121356-124382:+ | gene-YKL173W_CBS1585 | rna-NM_001179739.1_CBS1585 | cds-NP_012748.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:120121-123147:+ | gene-YKL173W_CBS436 | rna-NM_001179739.1_CBS436 | cds-NP_012748.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:106946-109972:+ | gene-YKL173W_CBS6412 | rna-NM_001179739.1_CBS6412 | cds-NP_012748.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:122072-125098:+ | gene-YKL173W_CBS6413 | rna-NM_001179739.1_CBS6413 | cds-NP_012748.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:122343-125369:+ | gene-YKL173W_CENPK1137D | rna-NM_001179739.1_CENPK1137D | cds-NP_012748.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:120258-123284:+ | gene-YKL173W_EthanolRed | rna-NM_001179739.1_EthanolRed | cds-NP_012748.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:120959-123985:+ | gene-YKL173W_FaliES1 | rna-NM_001179739.1_FaliES1 | cds-NP_012748.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000006.2:119943-122969:+ | gene-YKL173W_JAY291 | rna-NM_001179739.1_JAY291 | cds-NP_012748.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:129062-132088:+ | gene-YKL173W_MUCL30387 | rna-NM_001179739.1_MUCL30387 | cds-NP_012748.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:123406-126432:+ | gene-YKL173W_MUCL30388 | rna-NM_001179739.1_MUCL30388 | cds-NP_012748.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:121411-124437:+ | gene-YKL173W_MUCL39482 | rna-NM_001179739.1_MUCL39482 | cds-NP_012748.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:125746-128772:+ | gene-YKL173W_MUCL42920 | rna-NM_001179739.1_MUCL42920 | cds-NP_012748.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:122506-125532:+ | gene-YKL173W_NCIM3186 | rna-NM_001179739.1_NCIM3186 | cds-NP_012748.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:121435-124461:+ | gene-YKL173W_NCYC1407 | rna-NM_001179739.1_NCYC1407 | cds-NP_012748.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:128496-131522:+ | gene-YKL173W_PE2H3 | rna-NM_001179739.1_PE2H3 | cds-NP_012748.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:124790-127816:+ | gene-YKL173W_PE2H4 | rna-NM_001179739.1_PE2H4 | cds-NP_012748.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:122517-125543:+ | gene-YKL173W_S288C | rna-NM_001179739.1_S288C | cds-NP_012748.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:38723-41749:+ | gene-YKL173W_SA1 | rna-NM_001179739.1_SA1 | cds-NP_012748.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:121659-124685:+ | gene-YKL173W_ThermosaccDry | rna-NM_001179739.1_ThermosaccDry | cds-NP_012748.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:120201-123227:+ | gene-YKL173W_VR1 | rna-NM_001179739.1_VR1 | cds-NP_012748.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:120070-123096:+ | gene-YKL173W_ZTW1 | rna-NM_001179739.1_ZTW1 | cds-NP_012748.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:134594-137620:+ | gene-YKL173W_Sparadoxus | rna-NM_001179739.1_Sparadoxus | cds-NP_012748.1_Sparadoxus | 87.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |