Gene name: SNT309
Reference locus (S288C): YPR101W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor SNT309; Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; interacts physically and genetically with Prp19p
Top 10 interactors (score): SNU114 (0.999); LEA1 (0.999); SLU7 (0.999); NTC20 (0.999); CWC22 (0.999); SYF2 (0.999); PRP45 (0.999); PRP19 (0.999); SMD3 (0.999); ISY1 (0.999); YJU2 (0.999); SMB1 (0.999); BUD31 (0.999); CLF1 (0.999); BRR2 (0.999); PRP22 (0.999); CWC21 (0.999); SYF1 (0.999); CEF1 (0.999); CWC25 (0.999)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:702160-702687:+ | gene-YPR101W_AKU4011 | rna-NM_001184198.1_AKU4011 | cds-NP_015426.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:194988-195515:- | gene-YPR101W_BG1 | rna-NM_001184198.1_BG1 | cds-NP_015426.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:779839-780366:+ | gene-YPR101W_Bruggeman | rna-NM_001184198.1_Bruggeman | cds-NP_015426.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:824139-824666:+ | gene-YPR101W_CAT1 | rna-NM_001184198.1_CAT1 | cds-NP_015426.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:706087-706614:+ | gene-YPR101W_CBS1585 | rna-NM_001184198.1_CBS1585 | cds-NP_015426.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:720717-721244:+ | gene-YPR101W_CBS436 | rna-NM_001184198.1_CBS436 | cds-NP_015426.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:709222-709749:+ | gene-YPR101W_CBS6412 | rna-NM_001184198.1_CBS6412 | cds-NP_015426.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:703044-703571:+ | gene-YPR101W_CBS6413 | rna-NM_001184198.1_CBS6413 | cds-NP_015426.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:730470-730997:+ | gene-YPR101W_CENPK1137D | rna-NM_001184198.1_CENPK1137D | cds-NP_015426.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1029158-1029685:+ | gene-YPR101W_EthanolRed | rna-NM_001184198.1_EthanolRed | cds-NP_015426.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:707991-708518:+ | gene-YPR101W_FaliES1 | rna-NM_001184198.1_FaliES1 | cds-NP_015426.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000094.1:29886-30413:+ | gene-YPR101W_JAY291 | rna-NM_001184198.1_JAY291 | cds-NP_015426.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:721097-721624:+ | gene-YPR101W_MUCL30387 | rna-NM_001184198.1_MUCL30387 | cds-NP_015426.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:719787-720314:+ | gene-YPR101W_MUCL30388 | rna-NM_001184198.1_MUCL30388 | cds-NP_015426.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:699092-699619:+ | gene-YPR101W_MUCL39482 | rna-NM_001184198.1_MUCL39482 | cds-NP_015426.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:761938-762465:+ | gene-YPR101W_MUCL42920 | rna-NM_001184198.1_MUCL42920 | cds-NP_015426.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:730475-731002:+ | gene-YPR101W_NCIM3186 | rna-NM_001184198.1_NCIM3186 | cds-NP_015426.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:707518-708045:+ | gene-YPR101W_NCYC1407 | rna-NM_001184198.1_NCYC1407 | cds-NP_015426.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:713922-714449:+ | gene-YPR101W_PE2H3 | rna-NM_001184198.1_PE2H3 | cds-NP_015426.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:713570-714097:+ | gene-YPR101W_PE2H4 | rna-NM_001184198.1_PE2H4 | cds-NP_015426.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:730492-731019:+ | gene-YPR101W_S288C | rna-NM_001184198.1_S288C | cds-NP_015426.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:28610-29137:+ | gene-YPR101W_SA1 | rna-NM_001184198.1_SA1 | cds-NP_015426.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:707766-708293:+ | gene-YPR101W_ThermosaccDry | rna-NM_001184198.1_ThermosaccDry | cds-NP_015426.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:724421-724948:+ | gene-YPR101W_VR1 | rna-NM_001184198.1_VR1 | cds-NP_015426.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:706985-707512:+ | gene-YPR101W_ZTW1 | rna-NM_001184198.1_ZTW1 | cds-NP_015426.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:707943-708467:+ | gene-YPR101W_Sparadoxus | rna-NM_001184198.1_Sparadoxus | cds-NP_015426.1_Sparadoxus | 82.7 | 99.4 | Verified | 1 | 1 | 0 | False | False | False | True | False |