Gene name: SNT2
Reference locus (S288C): YGL131C
Gene biotype: protein_coding
Description: Subunit of Snt2C complex, RING finger ubiquitin ligase (E3); physically associates with Ecm5p and Rpd3p; along with Ecm5p, recruits Rpd3p to small number of promoters; colocalizes with Ecm5p, independently of Rpd3p, to promoters of stress response genes upon oxidative stress; involved in ubiquitination, degradation of excess histones; interacts with Ubc4p; role in regulating genes encoding amine transporters; relocalizes from nucleus to cytoplasm upon DNA replication stress
Top 10 interactors (score): ECM5 (0.956); RPD3 (0.949); VMA6 (0.896); MET2 (0.896); ATG7 (0.896); EAF6 (0.782); SET1 (0.74); SET3 (0.696); SIF2 (0.692); SPP1 (0.687); FAR11 (0.677); SDC1 (0.662); YDR306C (0.654); SPT6 (0.646); VAM6 (0.626); YLR352W (0.612); SAS3 (0.602); SAS2 (0.602); ESA1 (0.602); MET18 (0.602)
Homologues (species, bitscore): PHF14 (Homo sapiens, 80.5); Phf14 (Mus musculus, 84.7); phf14 (Danio rerio, 82.0); phf14 (Xenopus tropicalis, 79.0); rno (Drosophila melanogaster, 78.6); zfp-1 (Caenorhabditis elegans, 71.6); SDG14 (Arabidopsis thaliana, 76.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:264461-268672:- | gene-YGL131C_AKU4011 | rna-NM_001180996.1_AKU4011 | cds-NP_011384.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:136505-140716:+ | gene-YGL131C_BG1 | rna-NM_001180996.1_BG1 | cds-NP_011384.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:267160-271371:- | gene-YGL131C_Bruggeman | rna-NM_001180996.1_Bruggeman | cds-NP_011384.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:262749-266960:- | gene-YGL131C_CAT1 | rna-NM_001180996.1_CAT1 | cds-NP_011384.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:267788-271999:- | gene-YGL131C_CBS1585 | rna-NM_001180996.1_CBS1585 | cds-NP_011384.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:262701-266912:- | gene-YGL131C_CBS436 | rna-NM_001180996.1_CBS436 | cds-NP_011384.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:253429-257640:- | gene-YGL131C_CBS6412 | rna-NM_001180996.1_CBS6412 | cds-NP_011384.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:262649-266860:- | gene-YGL131C_CBS6413 | rna-NM_001180996.1_CBS6413 | cds-NP_011384.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:261907-266118:- | gene-YGL131C_CENPK1137D | rna-NM_001180996.1_CENPK1137D | cds-NP_011384.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:254173-258384:- | gene-YGL131C_EthanolRed | rna-NM_001180996.1_EthanolRed | cds-NP_011384.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:256129-260340:- | gene-YGL131C_FaliES1 | rna-NM_001180996.1_FaliES1 | cds-NP_011384.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000408.1:8851-13062:+ | gene-YGL131C_JAY291 | rna-NM_001180996.1_JAY291 | cds-NP_011384.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:264130-268341:- | gene-YGL131C_MUCL30387 | rna-NM_001180996.1_MUCL30387 | cds-NP_011384.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:267248-271459:- | gene-YGL131C_MUCL30388 | rna-NM_001180996.1_MUCL30388 | cds-NP_011384.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:264874-269085:- | gene-YGL131C_MUCL39482 | rna-NM_001180996.1_MUCL39482 | cds-NP_011384.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:268122-272333:- | gene-YGL131C_MUCL42920 | rna-NM_001180996.1_MUCL42920 | cds-NP_011384.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:261648-265859:- | gene-YGL131C_NCIM3186 | rna-NM_001180996.1_NCIM3186 | cds-NP_011384.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:256364-260575:- | gene-YGL131C_NCYC1407 | rna-NM_001180996.1_NCYC1407 | cds-NP_011384.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:257754-261965:- | gene-YGL131C_PE2H3 | rna-NM_001180996.1_PE2H3 | cds-NP_011384.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:262752-266963:- | gene-YGL131C_PE2H4 | rna-NM_001180996.1_PE2H4 | cds-NP_011384.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:261648-265859:- | gene-YGL131C_S288C | rna-NM_001180996.1_S288C | cds-NP_011384.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:6533-10744:- | gene-YGL131C_SA1 | rna-NM_001180996.1_SA1 | cds-NP_011384.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:256358-260569:- | gene-YGL131C_ThermosaccDry | rna-NM_001180996.1_ThermosaccDry | cds-NP_011384.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:366486-370697:- | gene-YGL131C_VR1 | rna-NM_001180996.1_VR1 | cds-NP_011384.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:253937-258148:- | gene-YGL131C_ZTW1 | rna-NM_001180996.1_ZTW1 | cds-NP_011384.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:259963-264174:- | gene-YGL131C_Sparadoxus | rna-NM_001180996.1_Sparadoxus | cds-NP_011384.1_Sparadoxus | 85.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |