Gene name: SNT1
Reference locus (S288C): YCR033W
Gene biotype: protein_coding
Description: Probable DNA-binding protein SNT1; Subunit of the Set3C deacetylase complex; interacts directly with the Set3C subunit, Sif2p; putative DNA-binding protein; mutant has increased aneuploidy tolerance; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): SIN3 (0.999); HOS2 (0.999); SIF2 (0.999); SET3 (0.999); HOS4 (0.998); CPR1 (0.998); RPD3 (0.997); HST1 (0.994); RXT3 (0.962); HDA1 (0.956); HOS1 (0.954); CTI6 (0.944); SDS3 (0.942); DEP1 (0.939); SAP30 (0.927); PHO23 (0.925); RXT2 (0.921); HHT2 (0.917); UME6 (0.91); HTA1 (0.907)
Homologues (species, bitscore): NCOR2 (Homo sapiens, 99.0); Ncor2 (Mus musculus, 90.1); ncor1 (Danio rerio, 93.2); ncor1 (Xenopus tropicalis, 90.5); Smr (Drosophila melanogaster, 76.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:179957-183637:+ | gene-YCR033W_AKU4011 | rna-NM_001178747.1_AKU4011 | cds-NP_009962.2_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:34448-38128:+ | gene-YCR033W_BG1 | rna-NM_001178747.1_BG1 | cds-NP_009962.2_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:176242-179922:+ | gene-YCR033W_Bruggeman | rna-NM_001178747.1_Bruggeman | cds-NP_009962.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:187385-191065:+ | gene-YCR033W_CAT1 | rna-NM_001178747.1_CAT1 | cds-NP_009962.2_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:174718-178398:+ | gene-YCR033W_CBS1585 | rna-NM_001178747.1_CBS1585 | cds-NP_009962.2_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:186361-190041:+ | gene-YCR033W_CBS436 | rna-NM_001178747.1_CBS436 | cds-NP_009962.2_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:168571-172251:+ | gene-YCR033W_CBS6412 | rna-NM_001178747.1_CBS6412 | cds-NP_009962.2_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:180895-184575:+ | gene-YCR033W_CBS6413 | rna-NM_001178747.1_CBS6413 | cds-NP_009962.2_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:185835-189515:+ | gene-YCR033W_CENPK1137D | rna-NM_001178747.1_CENPK1137D | cds-NP_009962.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:177719-181399:+ | gene-YCR033W_EthanolRed | rna-NM_001178747.1_EthanolRed | cds-NP_009962.2_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:180835-184515:+ | gene-YCR033W_FaliES1 | rna-NM_001178747.1_FaliES1 | cds-NP_009962.2_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000102.1:17110-20790:+ | gene-YCR033W_JAY291 | rna-NM_001178747.1_JAY291 | cds-NP_009962.2_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:173481-177161:+ | gene-YCR033W_MUCL30387 | rna-NM_001178747.1_MUCL30387 | cds-NP_009962.2_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:173268-176948:+ | gene-YCR033W_MUCL30388 | rna-NM_001178747.1_MUCL30388 | cds-NP_009962.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:181042-184722:+ | gene-YCR033W_MUCL39482 | rna-NM_001178747.1_MUCL39482 | cds-NP_009962.2_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:178835-182515:+ | gene-YCR033W_MUCL42920 | rna-NM_001178747.1_MUCL42920 | cds-NP_009962.2_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:186121-189801:+ | gene-YCR033W_NCIM3186 | rna-NM_001178747.1_NCIM3186 | cds-NP_009962.2_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:182806-186486:+ | gene-YCR033W_NCYC1407 | rna-NM_001178747.1_NCYC1407 | cds-NP_009962.2_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:191850-195530:+ | gene-YCR033W_PE2H3 | rna-NM_001178747.1_PE2H3 | cds-NP_009962.2_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:186471-190151:+ | gene-YCR033W_PE2H4 | rna-NM_001178747.1_PE2H4 | cds-NP_009962.2_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:186489-190169:+ | gene-YCR033W_S288C | rna-NM_001178747.1_S288C | cds-NP_009962.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000083.1:33998-37678:+ | gene-YCR033W_SA1 | rna-NM_001178747.1_SA1 | cds-NP_009962.2_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:181611-185291:+ | gene-YCR033W_ThermosaccDry | rna-NM_001178747.1_ThermosaccDry | cds-NP_009962.2_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:192626-196306:+ | gene-YCR033W_VR1 | rna-NM_001178747.1_VR1 | cds-NP_009962.2_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:179863-183543:+ | gene-YCR033W_ZTW1 | rna-NM_001178747.1_ZTW1 | cds-NP_009962.2_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:214046-217726:+ | gene-YCR033W_Sparadoxus | rna-NM_001178747.1_Sparadoxus | cds-NP_009962.2_Sparadoxus | 87.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |