SNR80 (YNCE0001C)

Gene profile

Gene name: SNR80
Reference locus (S288C): YNCE0001C
Gene biotype: snoRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005299.1:46555-46725:- gene-YNCE0001C_AKU4011 rna-NR_132163.1_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000075.1:33788-33958:+ gene-YNCE0001C_BG1 rna-NR_132163.1_BG1 Unknown 99.4 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005507.1:50075-50245:- gene-YNCE0001C_Bruggeman rna-NR_132163.1_Bruggeman Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005523.1:48500-48670:- gene-YNCE0001C_CAT1 rna-NR_132163.1_CAT1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005363.1:46502-46672:- gene-YNCE0001C_CBS1585 rna-NR_132163.1_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005347.1:47563-47733:- gene-YNCE0001C_CBS436 rna-NR_132163.1_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005331.1:46754-46924:- gene-YNCE0001C_CBS6412 rna-NR_132163.1_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005315.1:51396-51566:- gene-YNCE0001C_CBS6413 rna-NR_132163.1_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001526.1:49990-50160:- gene-YNCE0001C_CENPK1137D rna-NR_132163.1_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005475.1:46313-46483:- gene-YNCE0001C_EthanolRed rna-NR_132163.1_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005539.1:46576-46746:- gene-YNCE0001C_FaliES1 rna-NR_132163.1_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000427.1:11308-11478:+ gene-YNCE0001C_JAY291 rna-NR_132163.1_JAY291 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005411.1:50508-50677:- gene-YNCE0001C_MUCL30387 rna-NR_132163.1_MUCL30387 Unknown 99.4 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005443.1:46625-46795:- gene-YNCE0001C_MUCL30388 rna-NR_132163.1_MUCL30388 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005283.1:45869-46039:- gene-YNCE0001C_MUCL39482 rna-NR_132163.1_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005427.1:50509-50679:- gene-YNCE0001C_MUCL42920 rna-NR_132163.1_MUCL42920 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011814.1:52149-52319:- gene-YNCE0001C_NCIM3186 rna-NR_132163.1_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005267.1:50964-51134:- gene-YNCE0001C_NCYC1407 rna-NR_132163.1_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994144.1:54978-55148:- gene-YNCE0001C_PE2H3 rna-NR_132163.1_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999876.1:50894-51064:- gene-YNCE0001C_PE2H4 rna-NR_132163.1_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001137.3:52150-52320:- gene-YNCE0001C_S288C rna-NR_132163.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000053.1:34678-34848:+ gene-YNCE0001C_SA1 rna-NR_132163.1_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005491.1:46976-47146:- gene-YNCE0001C_ThermosaccDry rna-NR_132163.1_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005459.1:46186-46356:- gene-YNCE0001C_VR1 rna-NR_132163.1_VR1 Unknown 99.4 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000009.1:45914-46084:- gene-YNCE0001C_ZTW1 rna-NR_132163.1_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047491.1:50183-50355:- gene-YNCE0001C_Sparadoxus rna-NR_132163.1_Sparadoxus Unknown 94.7 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files