SNR52 (YNCE0020C)

Gene profile

Gene name: SNR52
Reference locus (S288C): YNCE0020C
Gene biotype: snoRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005299.1:424965-425056:- gene-YNCE0020C_AKU4011 rna-NR_132170.1_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000011.1:603-694:+ gene-YNCE0020C_BG1 rna-NR_132170.1_BG1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005507.1:435429-435520:- gene-YNCE0020C_Bruggeman rna-NR_132170.1_Bruggeman Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005523.1:430668-430759:- gene-YNCE0020C_CAT1 rna-NR_132170.1_CAT1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005363.1:424360-424451:- gene-YNCE0020C_CBS1585 rna-NR_132170.1_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005347.1:427103-427194:- gene-YNCE0020C_CBS436 rna-NR_132170.1_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005331.1:423438-423529:- gene-YNCE0020C_CBS6412 rna-NR_132170.1_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005315.1:430281-430372:- gene-YNCE0020C_CBS6413 rna-NR_132170.1_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001526.1:428848-428939:- gene-YNCE0020C_CENPK1137D rna-NR_132170.1_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005475.1:424808-424899:- gene-YNCE0020C_EthanolRed rna-NR_132170.1_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005539.1:425289-425380:- gene-YNCE0020C_FaliES1 rna-NR_132170.1_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000028.1:33549-33640:- gene-YNCE0020C_JAY291 rna-NR_132170.1_JAY291 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005411.1:432377-432468:- gene-YNCE0020C_MUCL30387 rna-NR_132170.1_MUCL30387 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005443.1:427324-427415:- gene-YNCE0020C_MUCL30388 rna-NR_132170.1_MUCL30388 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005283.1:423385-423476:- gene-YNCE0020C_MUCL39482 rna-NR_132170.1_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005427.1:431870-431961:- gene-YNCE0020C_MUCL42920 rna-NR_132170.1_MUCL42920 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011814.1:431128-431219:- gene-YNCE0020C_NCIM3186 rna-NR_132170.1_NCIM3186 Unknown 84.7 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005267.1:428918-429009:- gene-YNCE0020C_NCYC1407 rna-NR_132170.1_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994144.1:439501-439592:- gene-YNCE0020C_PE2H3 rna-NR_132170.1_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999876.1:429442-429533:- gene-YNCE0020C_PE2H4 rna-NR_132170.1_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001137.3:431129-431220:- gene-YNCE0020C_S288C rna-NR_132170.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000023.1:140684-140775:- gene-YNCE0020C_SA1 rna-NR_132170.1_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005491.1:426087-426178:- gene-YNCE0020C_ThermosaccDry rna-NR_132170.1_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005459.1:427134-427225:- gene-YNCE0020C_VR1 rna-NR_132170.1_VR1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000009.1:423214-423305:- gene-YNCE0020C_ZTW1 rna-NR_132170.1_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047491.1:427138-427229:- gene-YNCE0020C_Sparadoxus rna-NR_132170.1_Sparadoxus Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files