SNR47 (YNCD0010C)

Gene profile

Gene name: SNR47
Reference locus (S288C): YNCD0010C
Gene biotype: snoRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:519249-519347:- gene-YNCD0010C_AKU4011 rna-NR_132160.1_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000102.1:35851-35949:+ gene-YNCD0010C_BG1 rna-NR_132160.1_BG1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:551607-551705:- gene-YNCD0010C_Bruggeman rna-NR_132160.1_Bruggeman Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:534606-534704:- gene-YNCD0010C_CAT1 rna-NR_132160.1_CAT1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005362.1:510206-510304:- gene-YNCD0010C_CBS1585 rna-NR_132160.1_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005346.1:535378-535476:- gene-YNCD0010C_CBS436 rna-NR_132160.1_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005330.1:506617-506715:- gene-YNCD0010C_CBS6412 rna-NR_132160.1_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005314.1:535285-535383:- gene-YNCD0010C_CBS6413 rna-NR_132160.1_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001525.1:540692-540790:- gene-YNCD0010C_CENPK1137D rna-NR_132160.1_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005474.1:521173-521271:- gene-YNCD0010C_EthanolRed rna-NR_132160.1_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:527530-527628:- gene-YNCD0010C_FaliES1 rna-NR_132160.1_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000246.1:27092-27190:+ gene-YNCD0010C_JAY291 rna-NR_132160.1_JAY291 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:536113-536211:- gene-YNCD0010C_MUCL30387 rna-NR_132160.1_MUCL30387 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005442.1:526689-526787:- gene-YNCD0010C_MUCL30388 rna-NR_132160.1_MUCL30388 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:511574-511672:- gene-YNCD0010C_MUCL39482 rna-NR_132160.1_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005426.1:441808-441906:- gene-YNCD0010C_MUCL42920 rna-NR_132160.1_MUCL42920 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:541525-541623:- gene-YNCD0010C_NCIM3186 rna-NR_132160.1_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005266.1:510510-510608:- gene-YNCD0010C_NCYC1407 rna-NR_132160.1_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:530146-530244:- gene-YNCD0010C_PE2H3 rna-NR_132160.1_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:529451-529549:- gene-YNCD0010C_PE2H4 rna-NR_132160.1_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:541602-541700:- gene-YNCD0010C_S288C rna-NR_132160.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000065.1:58916-59014:- gene-YNCD0010C_SA1 rna-NR_132160.1_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:527008-527106:- gene-YNCD0010C_ThermosaccDry rna-NR_132160.1_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005458.1:539960-540058:- gene-YNCD0010C_VR1 rna-NR_132160.1_VR1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000006.1:524868-524966:- gene-YNCD0010C_ZTW1 rna-NR_132160.1_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:529211-529309:- gene-YNCD0010C_Sparadoxus rna-NR_132160.1_Sparadoxus Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files