SNR43 (YNCC0003C)

Gene profile

Gene name: SNR43
Reference locus (S288C): YNCC0003C
Gene biotype: snoRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005297.1:102223-102431:- gene-YNCC0003C_AKU4011 rna-NR_132155.1_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000178.1:43604-43812:+ gene-YNCC0003C_BG1 rna-NR_132155.1_BG1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005505.1:96806-97014:- gene-YNCC0003C_Bruggeman rna-NR_132155.1_Bruggeman Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005521.1:101956-102164:- gene-YNCC0003C_CAT1 rna-NR_132155.1_CAT1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005361.1:102871-103079:- gene-YNCC0003C_CBS1585 rna-NR_132155.1_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005345.1:107787-107995:- gene-YNCC0003C_CBS436 rna-NR_132155.1_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005329.1:90330-90538:- gene-YNCC0003C_CBS6412 rna-NR_132155.1_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005313.1:102178-102386:- gene-YNCC0003C_CBS6413 rna-NR_132155.1_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001524.1:106979-107187:- gene-YNCC0003C_CENPK1137D rna-NR_132155.1_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005473.1:100240-100448:- gene-YNCC0003C_EthanolRed rna-NR_132155.1_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005537.1:102533-102741:- gene-YNCC0003C_FaliES1 rna-NR_132155.1_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000126.1:16705-16913:- gene-YNCC0003C_JAY291 rna-NR_132155.1_JAY291 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005409.1:95241-95449:- gene-YNCC0003C_MUCL30387 rna-NR_132155.1_MUCL30387 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005441.1:94798-95006:- gene-YNCC0003C_MUCL30388 rna-NR_132155.1_MUCL30388 Unknown 99.5 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005281.1:103288-103496:- gene-YNCC0003C_MUCL39482 rna-NR_132155.1_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005425.1:98521-98729:- gene-YNCC0003C_MUCL42920 rna-NR_132155.1_MUCL42920 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011812.1:107136-107344:- gene-YNCC0003C_NCIM3186 rna-NR_132155.1_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005265.1:103770-103978:- gene-YNCC0003C_NCYC1407 rna-NR_132155.1_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994142.1:107939-108147:- gene-YNCC0003C_PE2H3 rna-NR_132155.1_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999874.1:107899-108107:- gene-YNCC0003C_PE2H4 rna-NR_132155.1_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001135.5:107504-107712:- gene-YNCC0003C_S288C rna-NR_132155.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000073.1:43620-43828:+ gene-YNCC0003C_SA1 rna-NR_132155.1_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005489.1:103106-103314:- gene-YNCC0003C_ThermosaccDry rna-NR_132155.1_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005457.1:113746-113954:- gene-YNCC0003C_VR1 rna-NR_132155.1_VR1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000004.1:102044-102252:- gene-YNCC0003C_ZTW1 rna-NR_132155.1_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047489.1:132285-132493:- gene-YNCC0003C_Sparadoxus rna-NR_132155.1_Sparadoxus Unknown 94.2 99.5 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files