SNR42 (YNCK0020C)

Gene profile

Gene name: SNR42
Reference locus (S288C): YNCK0020C
Gene biotype: snoRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005305.1:545057-545407:- gene-YNCK0020C_AKU4011 rna-NR_132203.1_AKU4011 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000113.1:98866-99216:+ gene-YNCK0020C_BG1 rna-NR_132203.1_BG1 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005513.1:566485-566835:- gene-YNCK0020C_Bruggeman rna-NR_132203.1_Bruggeman Unknown 99.1 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005529.1:562909-563259:- gene-YNCK0020C_CAT1 rna-NR_132203.1_CAT1 Unknown 99.1 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005369.1:557548-557898:- gene-YNCK0020C_CBS1585 rna-NR_132203.1_CBS1585 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005353.1:555882-556232:- gene-YNCK0020C_CBS436 rna-NR_132203.1_CBS436 Unknown 99.1 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005337.1:540838-541188:- gene-YNCK0020C_CBS6412 rna-NR_132203.1_CBS6412 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005321.1:557368-557718:- gene-YNCK0020C_CBS6413 rna-NR_132203.1_CBS6413 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001532.1:558670-559020:- gene-YNCK0020C_CENPK1137D rna-NR_132203.1_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005481.1:554366-554716:- gene-YNCK0020C_EthanolRed rna-NR_132203.1_EthanolRed Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005545.1:558266-558616:- gene-YNCK0020C_FaliES1 rna-NR_132203.1_FaliES1 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000410.1:19617-19967:+ gene-YNCK0020C_JAY291 rna-NR_132203.1_JAY291 Unknown 99.1 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005417.1:566884-567234:- gene-YNCK0020C_MUCL30387 rna-NR_132203.1_MUCL30387 Unknown 99.1 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005449.1:561496-561846:- gene-YNCK0020C_MUCL30388 rna-NR_132203.1_MUCL30388 Unknown 98.5 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005289.1:556377-556727:- gene-YNCK0020C_MUCL39482 rna-NR_132203.1_MUCL39482 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005433.1:562399-562749:- gene-YNCK0020C_MUCL42920 rna-NR_132203.1_MUCL42920 Unknown 99.1 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011820.1:559005-559355:- gene-YNCK0020C_NCIM3186 rna-NR_132203.1_NCIM3186 Unknown 99.1 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005273.1:556800-557150:- gene-YNCK0020C_NCYC1407 rna-NR_132203.1_NCYC1407 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994150.1:581959-582309:- gene-YNCK0020C_PE2H3 rna-NR_132203.1_PE2H3 Unknown 99.1 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999882.1:566354-566704:- gene-YNCK0020C_PE2H4 rna-NR_132203.1_PE2H4 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001143.9:559016-559366:- gene-YNCK0020C_S288C rna-NR_132203.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000029.1:122477-122827:+ gene-YNCK0020C_SA1 rna-NR_132203.1_SA1 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005497.1:557505-557855:- gene-YNCK0020C_ThermosaccDry rna-NR_132203.1_ThermosaccDry Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005465.1:557275-557625:- gene-YNCK0020C_VR1 rna-NR_132203.1_VR1 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000022.1:554993-555343:- gene-YNCK0020C_ZTW1 rna-NR_132203.1_ZTW1 Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047497.1:580402-580749:- gene-YNCK0020C_Sparadoxus rna-NR_132203.1_Sparadoxus Unknown 90.3 98.5 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files