SNR40 (YNCN0001W)

Gene profile

Gene name: SNR40
Reference locus (S288C): YNCN0001W
Gene biotype: snoRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005308.1:83028-83124:+ gene-YNCN0001W_AKU4011 rna-NR_132249.1_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000074.1:7526-7622:- gene-YNCN0001W_BG1 rna-NR_132249.1_BG1 Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005516.1:92370-92466:+ gene-YNCN0001W_Bruggeman rna-NR_132249.1_Bruggeman Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005532.1:94975-95071:+ gene-YNCN0001W_CAT1 rna-NR_132249.1_CAT1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005372.1:83358-83454:+ gene-YNCN0001W_CBS1585 rna-NR_132249.1_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005356.1:83843-83939:+ gene-YNCN0001W_CBS436 rna-NR_132249.1_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005340.1:80015-80111:+ gene-YNCN0001W_CBS6412 rna-NR_132249.1_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005324.1:80206-80302:+ gene-YNCN0001W_CBS6413 rna-NR_132249.1_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001535.1:83043-83139:+ gene-YNCN0001W_CENPK1137D rna-NR_132249.1_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005484.1:80044-80140:+ gene-YNCN0001W_EthanolRed rna-NR_132249.1_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005548.1:80943-81039:+ gene-YNCN0001W_FaliES1 rna-NR_132249.1_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000171.1:7181-7277:- gene-YNCN0001W_JAY291 rna-NR_132249.1_JAY291 Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005420.1:92869-92965:+ gene-YNCN0001W_MUCL30387 rna-NR_132249.1_MUCL30387 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005452.1:85649-85745:+ gene-YNCN0001W_MUCL30388 rna-NR_132249.1_MUCL30388 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005292.1:80992-81088:+ gene-YNCN0001W_MUCL39482 rna-NR_132249.1_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005436.1:82679-82775:+ gene-YNCN0001W_MUCL42920 rna-NR_132249.1_MUCL42920 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011823.1:89179-89275:+ gene-YNCN0001W_NCIM3186 rna-NR_132249.1_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005276.1:82324-82420:+ gene-YNCN0001W_NCYC1407 rna-NR_132249.1_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994153.1:79518-79614:+ gene-YNCN0001W_PE2H3 rna-NR_132249.1_PE2H3 Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999885.1:78906-79002:+ gene-YNCN0001W_PE2H4 rna-NR_132249.1_PE2H4 Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001146.8:89210-89306:+ gene-YNCN0001W_S288C rna-NR_132249.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000052.1:7912-8008:- gene-YNCN0001W_SA1 rna-NR_132249.1_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005500.1:81800-81896:+ gene-YNCN0001W_ThermosaccDry rna-NR_132249.1_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005468.1:94338-94434:+ gene-YNCN0001W_VR1 rna-NR_132249.1_VR1 Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000029.1:73011-73107:+ gene-YNCN0001W_ZTW1 rna-NR_132249.1_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047500.1:91037-91133:+ gene-YNCN0001W_Sparadoxus rna-NR_132249.1_Sparadoxus Unknown 97.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files