SNR17B (YNCP0005C)

Gene profile

Gene name: SNR17B
Reference locus (S288C): YNCP0005C
Gene biotype: snoRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005310.1:258710-259171:- gene-YNCP0005C_AKU4011 rna-NR_132267.1_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000069.1:464397-464857:- gene-YNCP0005C_BG1 rna-NR_132267.1_BG1 Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005518.1:284707-285167:- gene-YNCP0005C_Bruggeman rna-NR_132267.1_Bruggeman Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005534.1:281384-281844:- gene-YNCP0005C_CAT1 rna-NR_132267.1_CAT1 Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005374.1:262776-263237:- gene-YNCP0005C_CBS1585 rna-NR_132267.1_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005358.1:277451-277911:- gene-YNCP0005C_CBS436 rna-NR_132267.1_CBS436 Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005342.1:267451-267912:- gene-YNCP0005C_CBS6412 rna-NR_132267.1_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005326.1:259415-259876:- gene-YNCP0005C_CBS6413 rna-NR_132267.1_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001537.1:280958-281419:- gene-YNCP0005C_CENPK1137D rna-NR_132267.1_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005486.1:257401-257862:- gene-YNCP0005C_EthanolRed rna-NR_132267.1_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005550.1:264993-265454:- gene-YNCP0005C_FaliES1 rna-NR_132267.1_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000007.1:100400-100860:+ gene-YNCP0005C_JAY291 rna-NR_132267.1_JAY291 Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005422.1:275950-276410:- gene-YNCP0005C_MUCL30387 rna-NR_132267.1_MUCL30387 Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005454.1:273964-274424:- gene-YNCP0005C_MUCL30388 rna-NR_132267.1_MUCL30388 Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005294.1:256105-256566:- gene-YNCP0005C_MUCL39482 rna-NR_132267.1_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005438.1:313347-313808:- gene-YNCP0005C_MUCL42920 rna-NR_132267.1_MUCL42920 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011825.1:281039-281500:- gene-YNCP0005C_NCIM3186 rna-NR_132267.1_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005278.1:262565-263026:- gene-YNCP0005C_NCYC1407 rna-NR_132267.1_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994155.1:270012-270472:- gene-YNCP0005C_PE2H3 rna-NR_132267.1_PE2H3 Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999887.1:269642-270102:- gene-YNCP0005C_PE2H4 rna-NR_132267.1_PE2H4 Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:281056-281517:- gene-YNCP0005C_S288C rna-NR_132267.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000012.1:92171-92631:+ gene-YNCP0005C_SA1 rna-NR_132267.1_SA1 Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005502.1:264791-265252:- gene-YNCP0005C_ThermosaccDry rna-NR_132267.1_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005470.1:279768-280228:- gene-YNCP0005C_VR1 rna-NR_132267.1_VR1 Unknown 99.7 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000033.1:264122-264583:- gene-YNCP0005C_ZTW1 rna-NR_132267.1_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047502.1:265794-266257:- gene-YNCP0005C_Sparadoxus rna-NR_132267.1_Sparadoxus Unknown 93.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files