Gene name: SNP1
Reference locus (S288C): YIL061C
Gene biotype: protein_coding
Description: U1 small nuclear ribonucleoprotein 70 kDa homolog; Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): LEA1 (0.999); SMB1 (0.999); SMD2 (0.999); PRP40 (0.999); MUD2 (0.999); PRP39 (0.999); CBC2 (0.999); SMD3 (0.999); YHC1 (0.999); SMX3 (0.999); SNU56 (0.999); SMD1 (0.999); PRP42 (0.999); MSL1 (0.999); LUC7 (0.999); SME1 (0.999); NAM8 (0.999); MUD1 (0.999); SNU71 (0.999); SMX2 (0.999)
Homologues (species, bitscore): SNRNP70 (Homo sapiens, 105.5); Snrnp70 (Mus musculus, 105.5); snrnp70 (Danio rerio, 100.1); snrnp70 (Xenopus tropicalis, 104.0); snRNP70K (Drosophila melanogaster, 98.2); rnp-7 (Caenorhabditis elegans, 99.4); U1-70K (Arabidopsis thaliana, 120.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:241325-242227:- | gene-YIL061C_AKU4011 | rna-NM_001179411.1_AKU4011 | cds-NP_012203.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:103256-104158:- | gene-YIL061C_BG1 | rna-NM_001179411.1_BG1 | cds-NP_012203.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:246740-247642:- | gene-YIL061C_Bruggeman | rna-NM_001179411.1_Bruggeman | cds-NP_012203.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:237015-237917:- | gene-YIL061C_CAT1 | rna-NM_001179411.1_CAT1 | cds-NP_012203.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:240896-241798:- | gene-YIL061C_CBS1585 | rna-NM_001179411.1_CBS1585 | cds-NP_012203.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:236943-237845:- | gene-YIL061C_CBS436 | rna-NM_001179411.1_CBS436 | cds-NP_012203.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:238271-239173:- | gene-YIL061C_CBS6412 | rna-NM_001179411.1_CBS6412 | cds-NP_012203.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:232816-233718:- | gene-YIL061C_CBS6413 | rna-NM_001179411.1_CBS6413 | cds-NP_012203.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:236706-237608:- | gene-YIL061C_CENPK1137D | rna-NM_001179411.1_CENPK1137D | cds-NP_012203.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:225625-226527:- | gene-YIL061C_EthanolRed | rna-NM_001179411.1_EthanolRed | cds-NP_012203.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:242528-243430:- | gene-YIL061C_FaliES1 | rna-NM_001179411.1_FaliES1 | cds-NP_012203.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000365.1:54702-55604:+ | gene-YIL061C_JAY291 | rna-NM_001179411.1_JAY291 | cds-NP_012203.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:244960-245862:- | gene-YIL061C_MUCL30387 | rna-NM_001179411.1_MUCL30387 | cds-NP_012203.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:241565-242467:- | gene-YIL061C_MUCL30388 | rna-NM_001179411.1_MUCL30388 | cds-NP_012203.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:241742-242644:- | gene-YIL061C_MUCL39482 | rna-NM_001179411.1_MUCL39482 | cds-NP_012203.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:245109-246011:- | gene-YIL061C_MUCL42920 | rna-NM_001179411.1_MUCL42920 | cds-NP_012203.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:244657-245559:- | gene-YIL061C_NCIM3186 | rna-NM_001179411.1_NCIM3186 | cds-NP_012203.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:246018-246920:- | gene-YIL061C_NCYC1407 | rna-NM_001179411.1_NCYC1407 | cds-NP_012203.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:239998-240900:- | gene-YIL061C_PE2H3 | rna-NM_001179411.1_PE2H3 | cds-NP_012203.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:234716-235618:- | gene-YIL061C_PE2H4 | rna-NM_001179411.1_PE2H4 | cds-NP_012203.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:244657-245559:- | gene-YIL061C_S288C | rna-NM_001179411.1_S288C | cds-NP_012203.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000031.1:80282-81184:+ | gene-YIL061C_SA1 | rna-NM_001179411.1_SA1 | cds-NP_012203.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:241191-242093:- | gene-YIL061C_ThermosaccDry | rna-NM_001179411.1_ThermosaccDry | cds-NP_012203.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:238875-239777:- | gene-YIL061C_VR1 | rna-NM_001179411.1_VR1 | cds-NP_012203.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:215451-216353:- | gene-YIL061C_ZTW1 | rna-NM_001179411.1_ZTW1 | cds-NP_012203.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:239539-240441:- | gene-YIL061C_Sparadoxus | rna-NM_001179411.1_Sparadoxus | cds-NP_012203.1_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |