Gene name: SNN1
Reference locus (S288C): YNL086W
Gene biotype: protein_coding
Description: Subunit of the BLOC-1 complex involved in endosomal maturation; interacts with Msb3p; green fluorescent protein (GFP)-fusion protein localizes to endosomes
Top 10 interactors (score): BLI1 (0.997); CNL1 (0.996); VAB2 (0.996); KXD1 (0.992); BLS1 (0.988); MSB3 (0.822); VPS21 (0.794); YOR331C (0.745); RGI2 (0.638); YIL177C (0.619); CET1 (0.574); TCB2 (0.572); VPS41 (0.543); TCB1 (0.52); VAC8 (0.513); VHR1 (0.499); VAM6 (0.495); USV1 (0.493); RVS167 (0.454); MTC2 (0.452)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:459980-460288:+ | gene-YNL086W_AKU4011 | rna-NM_001182924.1_AKU4011 | cds-NP_014313.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:364066-364374:+ | gene-YNL086W_BG1 | rna-NM_001182924.1_BG1 | cds-NP_014313.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:470701-471009:+ | gene-YNL086W_Bruggeman | rna-NM_001182924.1_Bruggeman | cds-NP_014313.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:513727-514035:+ | gene-YNL086W_CAT1 | rna-NM_001182924.1_CAT1 | cds-NP_014313.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:460650-460958:+ | gene-YNL086W_CBS1585 | rna-NM_001182924.1_CBS1585 | cds-NP_014313.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:529042-529350:+ | gene-YNL086W_CBS436 | rna-NM_001182924.1_CBS436 | cds-NP_014313.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:455746-456054:+ | gene-YNL086W_CBS6412 | rna-NM_001182924.1_CBS6412 | cds-NP_014313.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:457062-457370:+ | gene-YNL086W_CBS6413 | rna-NM_001182924.1_CBS6413 | cds-NP_014313.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:460158-460466:+ | gene-YNL086W_CENPK1137D | rna-NM_001182924.1_CENPK1137D | cds-NP_014313.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:462806-463114:+ | gene-YNL086W_EthanolRed | rna-NM_001182924.1_EthanolRed | cds-NP_014313.1_EthanolRed | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:453335-453643:+ | gene-YNL086W_FaliES1 | rna-NM_001182924.1_FaliES1 | cds-NP_014313.1_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000317.1:19955-20263:- | gene-YNL086W_JAY291 | rna-NM_001182924.1_JAY291 | cds-NP_014313.1_JAY291 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:466877-467185:+ | gene-YNL086W_MUCL30387 | rna-NM_001182924.1_MUCL30387 | cds-NP_014313.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:502249-502557:+ | gene-YNL086W_MUCL30388 | rna-NM_001182924.1_MUCL30388 | cds-NP_014313.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:458054-458362:+ | gene-YNL086W_MUCL39482 | rna-NM_001182924.1_MUCL39482 | cds-NP_014313.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:461993-462301:+ | gene-YNL086W_MUCL42920 | rna-NM_001182924.1_MUCL42920 | cds-NP_014313.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:466303-466611:+ | gene-YNL086W_NCIM3186 | rna-NM_001182924.1_NCIM3186 | cds-NP_014313.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:460102-460410:+ | gene-YNL086W_NCYC1407 | rna-NM_001182924.1_NCYC1407 | cds-NP_014313.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:463341-463649:+ | gene-YNL086W_PE2H3 | rna-NM_001182924.1_PE2H3 | cds-NP_014313.1_PE2H3 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:458416-458724:+ | gene-YNL086W_PE2H4 | rna-NM_001182924.1_PE2H4 | cds-NP_014313.1_PE2H4 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:466334-466642:+ | gene-YNL086W_S288C | rna-NM_001182924.1_S288C | cds-NP_014313.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:51279-51587:+ | gene-YNL086W_SA1 | rna-NM_001182924.1_SA1 | cds-NP_014313.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:454210-454518:+ | gene-YNL086W_ThermosaccDry | rna-NM_001182924.1_ThermosaccDry | cds-NP_014313.1_ThermosaccDry | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:473321-473629:+ | gene-YNL086W_VR1 | rna-NM_001182924.1_VR1 | cds-NP_014313.1_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:363559-363867:+ | gene-YNL086W_ZTW1 | rna-NM_001182924.1_ZTW1 | cds-NP_014313.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:469718-470026:+ | gene-YNL086W_Sparadoxus | rna-NM_001182924.1_Sparadoxus | cds-NP_014313.1_Sparadoxus | 87.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |