Gene name: SNM1
Reference locus (S288C): YDR478W
Gene biotype: protein_coding
Description: Ribonuclease MRP complex subunit; ribonuclease (RNase) MRP cleaves pre-rRNA and has a role in cell cycle-regulated degradation of daughter cell-specific mRNAs; binds to the NME1 RNA subunit of RNase MRP
Top 10 interactors (score): POP1 (0.999); RMP1 (0.999); POP4 (0.993); RPP1 (0.988); POP7 (0.971); POP6 (0.968); POP3 (0.959); POP8 (0.958); POP5 (0.958); YDR476C (0.813); JIP4 (0.765); LSM7 (0.755); LCP5 (0.74); RRP9 (0.727); LSM2 (0.724); NOP56 (0.72); LSM4 (0.72); NOP10 (0.72); NOP58 (0.72); PIH1 (0.72)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1354499-1355095:+ | gene-YDR478W_AKU4011 | rna-NM_001180786.3_AKU4011 | cds-NP_010766.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:229604-230200:+ | gene-YDR478W_BG1 | rna-NM_001180786.3_BG1 | cds-NP_010766.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1385906-1386502:+ | gene-YDR478W_Bruggeman | rna-NM_001180786.3_Bruggeman | cds-NP_010766.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1363054-1363650:+ | gene-YDR478W_CAT1 | rna-NM_001180786.3_CAT1 | cds-NP_010766.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1348798-1349394:+ | gene-YDR478W_CBS1585 | rna-NM_001180786.3_CBS1585 | cds-NP_010766.3_CBS1585 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1368156-1368752:+ | gene-YDR478W_CBS436 | rna-NM_001180786.3_CBS436 | cds-NP_010766.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1344422-1345018:+ | gene-YDR478W_CBS6412 | rna-NM_001180786.3_CBS6412 | cds-NP_010766.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1367433-1368029:+ | gene-YDR478W_CBS6413 | rna-NM_001180786.3_CBS6413 | cds-NP_010766.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1413271-1413867:+ | gene-YDR478W_CENPK1137D | rna-NM_001180786.3_CENPK1137D | cds-NP_010766.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1357840-1358436:+ | gene-YDR478W_EthanolRed | rna-NM_001180786.3_EthanolRed | cds-NP_010766.3_EthanolRed | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1361393-1361989:+ | gene-YDR478W_FaliES1 | rna-NM_001180786.3_FaliES1 | cds-NP_010766.3_FaliES1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:59645-60241:+ | gene-YDR478W_JAY291 | rna-NM_001180786.3_JAY291 | cds-NP_010766.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1368397-1368993:+ | gene-YDR478W_MUCL30387 | rna-NM_001180786.3_MUCL30387 | cds-NP_010766.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1350420-1351016:+ | gene-YDR478W_MUCL30388 | rna-NM_001180786.3_MUCL30388 | cds-NP_010766.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1340283-1340879:+ | gene-YDR478W_MUCL39482 | rna-NM_001180786.3_MUCL39482 | cds-NP_010766.3_MUCL39482 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1283072-1283668:+ | gene-YDR478W_MUCL42920 | rna-NM_001180786.3_MUCL42920 | cds-NP_010766.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1414498-1415094:+ | gene-YDR478W_NCIM3186 | rna-NM_001180786.3_NCIM3186 | cds-NP_010766.3_NCIM3186 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1354052-1354648:+ | gene-YDR478W_NCYC1407 | rna-NM_001180786.3_NCYC1407 | cds-NP_010766.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1364897-1365493:+ | gene-YDR478W_PE2H3 | rna-NM_001180786.3_PE2H3 | cds-NP_010766.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1370471-1371067:+ | gene-YDR478W_PE2H4 | rna-NM_001180786.3_PE2H4 | cds-NP_010766.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1414575-1415171:+ | gene-YDR478W_S288C | rna-NM_001180786.3_S288C | cds-NP_010766.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:201987-202583:- | gene-YDR478W_SA1 | rna-NM_001180786.3_SA1 | cds-NP_010766.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1365615-1366211:+ | gene-YDR478W_ThermosaccDry | rna-NM_001180786.3_ThermosaccDry | cds-NP_010766.3_ThermosaccDry | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1381340-1381936:+ | gene-YDR478W_VR1 | rna-NM_001180786.3_VR1 | cds-NP_010766.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:408282-408878:+ | gene-YDR478W_ZTW1 | rna-NM_001180786.3_ZTW1 | cds-NP_010766.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1368378-1368977:+ | gene-YDR478W_Sparadoxus | rna-NM_001180786.3_Sparadoxus | cds-NP_010766.3_Sparadoxus | 85.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |