Gene name: SNL1
Reference locus (S288C): YIL016W
Gene biotype: protein_coding
Description: HSP70 co-chaperone SNL1; Ribosome-associated protein; proposed to act in protein synthesis and nuclear pore complex biogenesis and maintenance as well as protein folding; has similarity to the mammalian BAG-1 protein
Top 10 interactors (score): FES1 (0.976); SSE1 (0.971); SSE2 (0.96); SSA1 (0.822); NUP116 (0.796); CNS1 (0.784); STI1 (0.78); AIM20 (0.706); SIL1 (0.671); PAU8 (0.656); ANS1 (0.616); NAT4 (0.534); PAU11 (0.53); YDJ1 (0.507); PAU3 (0.485); VID28 (0.48); GIS2 (0.463); TAF4 (0.461); PAU1 (0.454); PAU14 (0.454)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:319913-320392:+ | gene-YIL016W_AKU4011 | rna-NM_001179366.1_AKU4011 | cds-NP_012248.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000107.1:3701-4180:+ | gene-YIL016W_BG1 | rna-NM_001179366.1_BG1 | cds-NP_012248.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:325056-325535:+ | gene-YIL016W_Bruggeman | rna-NM_001179366.1_Bruggeman | cds-NP_012248.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:312472-312951:+ | gene-YIL016W_CAT1 | rna-NM_001179366.1_CAT1 | cds-NP_012248.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:320004-320483:+ | gene-YIL016W_CBS1585 | rna-NM_001179366.1_CBS1585 | cds-NP_012248.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:313436-313915:+ | gene-YIL016W_CBS436 | rna-NM_001179366.1_CBS436 | cds-NP_012248.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:315536-316015:+ | gene-YIL016W_CBS6412 | rna-NM_001179366.1_CBS6412 | cds-NP_012248.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:311918-312397:+ | gene-YIL016W_CBS6413 | rna-NM_001179366.1_CBS6413 | cds-NP_012248.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:313364-313843:+ | gene-YIL016W_CENPK1137D | rna-NM_001179366.1_CENPK1137D | cds-NP_012248.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:302878-303357:+ | gene-YIL016W_EthanolRed | rna-NM_001179366.1_EthanolRed | cds-NP_012248.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:320789-321268:+ | gene-YIL016W_FaliES1 | rna-NM_001179366.1_FaliES1 | cds-NP_012248.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000189.1:2393-2872:- | gene-YIL016W_JAY291 | rna-NM_001179366.1_JAY291 | cds-NP_012248.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:321906-322385:+ | gene-YIL016W_MUCL30387 | rna-NM_001179366.1_MUCL30387 | cds-NP_012248.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:318011-318490:+ | gene-YIL016W_MUCL30388 | rna-NM_001179366.1_MUCL30388 | cds-NP_012248.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:320593-321072:+ | gene-YIL016W_MUCL39482 | rna-NM_001179366.1_MUCL39482 | cds-NP_012248.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:323727-324206:+ | gene-YIL016W_MUCL42920 | rna-NM_001179366.1_MUCL42920 | cds-NP_012248.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:321454-321933:+ | gene-YIL016W_NCIM3186 | rna-NM_001179366.1_NCIM3186 | cds-NP_012248.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:324866-325345:+ | gene-YIL016W_NCYC1407 | rna-NM_001179366.1_NCYC1407 | cds-NP_012248.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:316507-316986:+ | gene-YIL016W_PE2H3 | rna-NM_001179366.1_PE2H3 | cds-NP_012248.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:311213-311692:+ | gene-YIL016W_PE2H4 | rna-NM_001179366.1_PE2H4 | cds-NP_012248.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:321454-321933:+ | gene-YIL016W_S288C | rna-NM_001179366.1_S288C | cds-NP_012248.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000031.1:2599-3078:- | gene-YIL016W_SA1 | rna-NM_001179366.1_SA1 | cds-NP_012248.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:319459-319938:+ | gene-YIL016W_ThermosaccDry | rna-NM_001179366.1_ThermosaccDry | cds-NP_012248.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:316097-316576:+ | gene-YIL016W_VR1 | rna-NM_001179366.1_VR1 | cds-NP_012248.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:293880-294359:+ | gene-YIL016W_ZTW1 | rna-NM_001179366.1_ZTW1 | cds-NP_012248.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:314575-315054:+ | gene-YIL016W_Sparadoxus | rna-NM_001179366.1_Sparadoxus | cds-NP_012248.1_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |