Gene name: SNF8
Reference locus (S288C): YPL002C
Gene biotype: protein_coding
Description: Vacuolar-sorting protein SNF8; Component of the ESCRT-II complex; ESCRT-II is involved in ubiquitin-dependent sorting of proteins into the endosome; appears to be functionally related to SNF7; involved in glucose derepression
Top 10 interactors (score): SNF7 (0.999); VPS36 (0.999); VPS20 (0.999); STP22 (0.999); VPS25 (0.999); VPS28 (0.999); VPS24 (0.998); DID4 (0.998); MVB12 (0.988); SRN2 (0.985); VPS27 (0.975); HSE1 (0.968); PEP3 (0.968); RIM20 (0.931); BRO1 (0.914); FUR4 (0.85); DID2 (0.805); RIM101 (0.781); VPS60 (0.762); VPS4 (0.713)
Homologues (species, bitscore): SNF8 (Homo sapiens, 161.4); Snf8 (Mus musculus, 159.5); snf8 (Danio rerio, 150.6); snf8 (Xenopus tropicalis, 104.4); lsn (Drosophila melanogaster, 127.5); vps-22 (Caenorhabditis elegans, 134.0); VPS22 (Arabidopsis thaliana, 131.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:525087-525788:- | gene-YPL002C_AKU4011 | rna-NM_001183816.1_AKU4011 | cds-NP_015323.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:371389-372090:+ | gene-YPL002C_BG1 | rna-NM_001183816.1_BG1 | cds-NP_015323.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:602026-602727:- | gene-YPL002C_Bruggeman | rna-NM_001183816.1_Bruggeman | cds-NP_015323.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:644772-645473:- | gene-YPL002C_CAT1 | rna-NM_001183816.1_CAT1 | cds-NP_015323.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:529264-529965:- | gene-YPL002C_CBS1585 | rna-NM_001183816.1_CBS1585 | cds-NP_015323.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:543328-544029:- | gene-YPL002C_CBS436 | rna-NM_001183816.1_CBS436 | cds-NP_015323.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:533013-533714:- | gene-YPL002C_CBS6412 | rna-NM_001183816.1_CBS6412 | cds-NP_015323.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:525724-526425:- | gene-YPL002C_CBS6413 | rna-NM_001183816.1_CBS6413 | cds-NP_015323.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:553628-554329:- | gene-YPL002C_CENPK1137D | rna-NM_001183816.1_CENPK1137D | cds-NP_015323.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:523511-524212:- | gene-YPL002C_EthanolRed | rna-NM_001183816.1_EthanolRed | cds-NP_015323.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:531341-532042:- | gene-YPL002C_FaliES1 | rna-NM_001183816.1_FaliES1 | cds-NP_015323.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000341.1:5972-6673:+ | gene-YPL002C_JAY291 | rna-NM_001183816.1_JAY291 | cds-NP_015323.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:542981-543682:- | gene-YPL002C_MUCL30387 | rna-NM_001183816.1_MUCL30387 | cds-NP_015323.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:542083-542784:- | gene-YPL002C_MUCL30388 | rna-NM_001183816.1_MUCL30388 | cds-NP_015323.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:522504-523205:- | gene-YPL002C_MUCL39482 | rna-NM_001183816.1_MUCL39482 | cds-NP_015323.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:581597-582298:- | gene-YPL002C_MUCL42920 | rna-NM_001183816.1_MUCL42920 | cds-NP_015323.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:553610-554311:- | gene-YPL002C_NCIM3186 | rna-NM_001183816.1_NCIM3186 | cds-NP_015323.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:529763-530464:- | gene-YPL002C_NCYC1407 | rna-NM_001183816.1_NCYC1407 | cds-NP_015323.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:536459-537160:- | gene-YPL002C_PE2H3 | rna-NM_001183816.1_PE2H3 | cds-NP_015323.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:536074-536775:- | gene-YPL002C_PE2H4 | rna-NM_001183816.1_PE2H4 | cds-NP_015323.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:553627-554328:- | gene-YPL002C_S288C | rna-NM_001183816.1_S288C | cds-NP_015323.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:50368-51069:- | gene-YPL002C_SA1 | rna-NM_001183816.1_SA1 | cds-NP_015323.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:531140-531841:- | gene-YPL002C_ThermosaccDry | rna-NM_001183816.1_ThermosaccDry | cds-NP_015323.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:546538-547239:- | gene-YPL002C_VR1 | rna-NM_001183816.1_VR1 | cds-NP_015323.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:530446-531147:- | gene-YPL002C_ZTW1 | rna-NM_001183816.1_ZTW1 | cds-NP_015323.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:530309-531010:- | gene-YPL002C_Sparadoxus | rna-NM_001183816.1_Sparadoxus | cds-NP_015323.1_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |