Gene name: SNF7
Reference locus (S288C): YLR025W
Gene biotype: protein_coding
Description: Vacuolar-sorting protein SNF7; One of four subunits of the ESCRT-III complex; involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway; recruited from the cytoplasm to endosomal membranes; ESCRT-III stands for endosomal sorting complex required for transport III
Top 10 interactors (score): VPS4 (0.999); STP22 (0.999); DID4 (0.999); VPS36 (0.999); VPS20 (0.999); VPS28 (0.999); BRO1 (0.999); VPS24 (0.999); SNF8 (0.999); DID2 (0.999); VPS25 (0.999); RIM20 (0.999); VPS60 (0.999); VPS27 (0.997); RIM13 (0.996); CHM7 (0.994); IST1 (0.992); RIM101 (0.99); DOA4 (0.99); SRN2 (0.988)
Homologues (species, bitscore): ENSP00000433967 (Homo sapiens, 140.2); Chmp4b (Mus musculus, 129.0); chmp4b (Danio rerio, 137.5); chmp4c (Xenopus tropicalis, 122.9); shrb (Drosophila melanogaster, 122.1); vps-32.1 (Caenorhabditis elegans, 105.9); SNF7.2 (Arabidopsis thaliana, 92.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:182391-183113:+ | gene-YLR025W_AKU4011 | rna-NM_001181912.1_AKU4011 | cds-NP_013125.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:145662-146384:+ | gene-YLR025W_BG1 | rna-NM_001181912.1_BG1 | cds-NP_013125.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:192785-193507:+ | gene-YLR025W_Bruggeman | rna-NM_001181912.1_Bruggeman | cds-NP_013125.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:193108-193830:+ | gene-YLR025W_CAT1 | rna-NM_001181912.1_CAT1 | cds-NP_013125.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:190016-190738:+ | gene-YLR025W_CBS1585 | rna-NM_001181912.1_CBS1585 | cds-NP_013125.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:180648-181370:+ | gene-YLR025W_CBS436 | rna-NM_001181912.1_CBS436 | cds-NP_013125.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:188426-189148:+ | gene-YLR025W_CBS6412 | rna-NM_001181912.1_CBS6412 | cds-NP_013125.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:190278-191000:+ | gene-YLR025W_CBS6413 | rna-NM_001181912.1_CBS6413 | cds-NP_013125.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:179701-180423:+ | gene-YLR025W_CENPK1137D | rna-NM_001181912.1_CENPK1137D | cds-NP_013125.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:182403-183125:+ | gene-YLR025W_EthanolRed | rna-NM_001181912.1_EthanolRed | cds-NP_013125.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:181973-182695:+ | gene-YLR025W_FaliES1 | rna-NM_001181912.1_FaliES1 | cds-NP_013125.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000431.1:26168-26890:+ | gene-YLR025W_JAY291 | rna-NM_001181912.1_JAY291 | cds-NP_013125.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:190134-190856:+ | gene-YLR025W_MUCL30387 | rna-NM_001181912.1_MUCL30387 | cds-NP_013125.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:196756-197478:+ | gene-YLR025W_MUCL30388 | rna-NM_001181912.1_MUCL30388 | cds-NP_013125.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:190511-191233:+ | gene-YLR025W_MUCL39482 | rna-NM_001181912.1_MUCL39482 | cds-NP_013125.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:190412-191134:+ | gene-YLR025W_MUCL42920 | rna-NM_001181912.1_MUCL42920 | cds-NP_013125.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:194426-195148:+ | gene-YLR025W_NCIM3186 | rna-NM_001181912.1_NCIM3186 | cds-NP_013125.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:182130-182852:+ | gene-YLR025W_NCYC1407 | rna-NM_001181912.1_NCYC1407 | cds-NP_013125.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:188445-189167:+ | gene-YLR025W_PE2H3 | rna-NM_001181912.1_PE2H3 | cds-NP_013125.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:188186-188908:+ | gene-YLR025W_PE2H4 | rna-NM_001181912.1_PE2H4 | cds-NP_013125.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:194452-195174:+ | gene-YLR025W_S288C | rna-NM_001181912.1_S288C | cds-NP_013125.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:26303-27025:+ | gene-YLR025W_SA1 | rna-NM_001181912.1_SA1 | cds-NP_013125.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:182478-183200:+ | gene-YLR025W_ThermosaccDry | rna-NM_001181912.1_ThermosaccDry | cds-NP_013125.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:195894-196616:+ | gene-YLR025W_VR1 | rna-NM_001181912.1_VR1 | cds-NP_013125.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:181840-182562:+ | gene-YLR025W_ZTW1 | rna-NM_001181912.1_ZTW1 | cds-NP_013125.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:190627-191349:+ | gene-YLR025W_Sparadoxus | rna-NM_001181912.1_Sparadoxus | cds-NP_013125.1_Sparadoxus | 91.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |