Gene name: SNF6
Reference locus (S288C): YHL025W
Gene biotype: protein_coding
Description: Transcription regulatory protein SNF6; Subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf5p; relocates to the cytosol under hypoxic conditions
Top 10 interactors (score): ARP7 (0.999); SWI3 (0.999); SWP82 (0.999); ARP9 (0.999); SNF2 (0.999); SWI1 (0.999); SNF11 (0.999); SNF5 (0.999); SNF12 (0.999); TAF14 (0.998); RTT102 (0.998); RAD4 (0.883); RAD23 (0.829); SUC2 (0.781); CBC2 (0.748); SPT6 (0.697); NPL6 (0.692); STH1 (0.678); SNF4 (0.572); SNF1 (0.555)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:49746-50744:+ | gene-YHL025W_AKU4011 | rna-NM_001179105.1_AKU4011 | cds-NP_011838.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000180.1:26033-27031:- | gene-YHL025W_BG1 | rna-NM_001179105.1_BG1 | cds-NP_011838.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:56389-57387:+ | gene-YHL025W_Bruggeman | rna-NM_001179105.1_Bruggeman | cds-NP_011838.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:50622-51620:+ | gene-YHL025W_CAT1 | rna-NM_001179105.1_CAT1 | cds-NP_011838.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:50347-51345:+ | gene-YHL025W_CBS1585 | rna-NM_001179105.1_CBS1585 | cds-NP_011838.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:42875-43873:+ | gene-YHL025W_CBS436 | rna-NM_001179105.1_CBS436 | cds-NP_011838.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:50294-51292:+ | gene-YHL025W_CBS6412 | rna-NM_001179105.1_CBS6412 | cds-NP_011838.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:49757-50755:+ | gene-YHL025W_CBS6413 | rna-NM_001179105.1_CBS6413 | cds-NP_011838.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:48014-49012:+ | gene-YHL025W_CENPK1137D | rna-NM_001179105.1_CENPK1137D | cds-NP_011838.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:49978-50976:+ | gene-YHL025W_EthanolRed | rna-NM_001179105.1_EthanolRed | cds-NP_011838.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:50294-51292:+ | gene-YHL025W_FaliES1 | rna-NM_001179105.1_FaliES1 | cds-NP_011838.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000003.1:18984-19982:+ | gene-YHL025W_JAY291 | rna-NM_001179105.1_JAY291 | cds-NP_011838.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:52227-53225:+ | gene-YHL025W_MUCL30387 | rna-NM_001179105.1_MUCL30387 | cds-NP_011838.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:54075-55073:+ | gene-YHL025W_MUCL30388 | rna-NM_001179105.1_MUCL30388 | cds-NP_011838.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:49338-50336:+ | gene-YHL025W_MUCL39482 | rna-NM_001179105.1_MUCL39482 | cds-NP_011838.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:53308-54306:+ | gene-YHL025W_MUCL42920 | rna-NM_001179105.1_MUCL42920 | cds-NP_011838.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:54733-55731:+ | gene-YHL025W_NCIM3186 | rna-NM_001179105.1_NCIM3186 | cds-NP_011838.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:48821-49819:+ | gene-YHL025W_NCYC1407 | rna-NM_001179105.1_NCYC1407 | cds-NP_011838.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:45058-46056:+ | gene-YHL025W_PE2H3 | rna-NM_001179105.1_PE2H3 | cds-NP_011838.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:52499-53497:+ | gene-YHL025W_PE2H4 | rna-NM_001179105.1_PE2H4 | cds-NP_011838.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:54851-55849:+ | gene-YHL025W_S288C | rna-NM_001179105.1_S288C | cds-NP_011838.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:39159-40157:+ | gene-YHL025W_SA1 | rna-NM_001179105.1_SA1 | cds-NP_011838.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:51389-52387:+ | gene-YHL025W_ThermosaccDry | rna-NM_001179105.1_ThermosaccDry | cds-NP_011838.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:56102-57100:+ | gene-YHL025W_VR1 | rna-NM_001179105.1_VR1 | cds-NP_011838.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:42590-43588:+ | gene-YHL025W_ZTW1 | rna-NM_001179105.1_ZTW1 | cds-NP_011838.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:48926-49930:+ | gene-YHL025W_Sparadoxus | rna-NM_001179105.1_Sparadoxus | cds-NP_011838.1_Sparadoxus | 88.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |