Gene name: SNF5
Reference locus (S288C): YBR289W
Gene biotype: protein_coding
Description: Subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf6p; relocates to the cytosol under hypoxic conditions
Top 10 interactors (score): SNF12 (0.999); ARP9 (0.999); SWI1 (0.999); ARP7 (0.999); SNF6 (0.999); SWI3 (0.999); STH1 (0.999); SNF2 (0.999); SWP82 (0.999); RSC8 (0.998); TAF14 (0.998); RSC6 (0.998); RPO21 (0.996); SNF11 (0.996); RTT102 (0.995); ARP4 (0.995); GCN5 (0.992); RSC1 (0.979); RSC2 (0.974); TAF1 (0.97)
Homologues (species, bitscore): SMARCB1 (Homo sapiens, 124.0); Smarcb1 (Mus musculus, 124.0); smarcb1b (Danio rerio, 125.6); smarcb1 (Xenopus tropicalis, 125.2); Snr1 (Drosophila melanogaster, 132.5); snfc-5 (Caenorhabditis elegans, 128.6); BSH (Arabidopsis thaliana, 81.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:763966-766710:+ | gene-YBR289W_AKU4011 | rna-NM_001178637.4_AKU4011 | cds-NP_009848.4_AKU4011 | 97.5 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:134960-137707:+ | gene-YBR289W_BG1 | rna-NM_001178637.4_BG1 | cds-NP_009848.4_BG1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:765099-767788:+ | gene-YBR289W_Bruggeman | rna-NM_001178637.4_Bruggeman | cds-NP_009848.4_Bruggeman | 98.6 | 98.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:768823-771542:+ | gene-YBR289W_CAT1 | rna-NM_001178637.4_CAT1 | cds-NP_009848.4_CAT1 | 98.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:755532-758276:+ | gene-YBR289W_CBS1585 | rna-NM_001178637.4_CBS1585 | cds-NP_009848.4_CBS1585 | 97.5 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:761949-764669:+ | gene-YBR289W_CBS436 | rna-NM_001178637.4_CBS436 | cds-NP_009848.4_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:850145-852826:+ | gene-YBR289W_CBS6412 | rna-NM_001178637.4_CBS6412 | cds-NP_009848.4_CBS6412 | 96.9 | 98.3 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:761581-764307:+ | gene-YBR289W_CBS6413 | rna-NM_001178637.4_CBS6413 | cds-NP_009848.4_CBS6413 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:773566-776283:+ | gene-YBR289W_CENPK1137D | rna-NM_001178637.4_CENPK1137D | cds-NP_009848.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:887005-889743:+ | gene-YBR289W_EthanolRed | rna-NM_001178637.4_EthanolRed | cds-NP_009848.4_EthanolRed | 97.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:780352-783090:+ | gene-YBR289W_FaliES1 | rna-NM_001178637.4_FaliES1 | cds-NP_009848.4_FaliES1 | 97.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:21085-23741:- | gene-YBR289W_JAY291 | rna-NM_001178637.4_JAY291 | cds-NP_009848.4_JAY291 | 97.6 | 97.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:767139-769853:+ | gene-YBR289W_MUCL30387 | rna-NM_001178637.4_MUCL30387 | cds-NP_009848.4_MUCL30387 | 99.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:784220-786940:+ | gene-YBR289W_MUCL30388 | rna-NM_001178637.4_MUCL30388 | cds-NP_009848.4_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:753839-756583:+ | gene-YBR289W_MUCL39482 | rna-NM_001178637.4_MUCL39482 | cds-NP_009848.4_MUCL39482 | 97.5 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:763685-766399:+ | gene-YBR289W_MUCL42920 | rna-NM_001178637.4_MUCL42920 | cds-NP_009848.4_MUCL42920 | 99.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:779464-782181:+ | gene-YBR289W_NCIM3186 | rna-NM_001178637.4_NCIM3186 | cds-NP_009848.4_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:755728-758472:+ | gene-YBR289W_NCYC1407 | rna-NM_001178637.4_NCYC1407 | cds-NP_009848.4_NCYC1407 | 97.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:778826-781567:+ | gene-YBR289W_PE2H3 | rna-NM_001178637.4_PE2H3 | cds-NP_009848.4_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:776502-779243:+ | gene-YBR289W_PE2H4 | rna-NM_001178637.4_PE2H4 | cds-NP_009848.4_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:779667-782384:+ | gene-YBR289W_S288C | rna-NM_001178637.4_S288C | cds-NP_009848.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:134782-137523:+ | gene-YBR289W_SA1 | rna-NM_001178637.4_SA1 | cds-NP_009848.4_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:779344-782082:+ | gene-YBR289W_ThermosaccDry | rna-NM_001178637.4_ThermosaccDry | cds-NP_009848.4_ThermosaccDry | 97.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:759526-762267:+ | gene-YBR289W_VR1 | rna-NM_001178637.4_VR1 | cds-NP_009848.4_VR1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:752180-754900:+ | gene-YBR289W_ZTW1 | rna-NM_001178637.4_ZTW1 | cds-NP_009848.4_ZTW1 | 98.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:796058-798712:+ | gene-YBR289W_Sparadoxus | rna-NM_001178637.4_Sparadoxus | cds-NP_009848.4_Sparadoxus | 86.3 | 97.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |