Gene name: SNF4
Reference locus (S288C): YGL115W
Gene biotype: protein_coding
Description: Activating gamma subunit of the AMP-activated Snf1p kinase complex; additional subunits of the complex are Snf1p and a Sip1p/Sip2p/Gal83p family member; activates glucose-repressed genes, represses glucose-induced genes; role in sporulation, and peroxisome biogenesis; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): GAL83 (0.999); SIP2 (0.999); SNF1 (0.999); SIP1 (0.999); SAK1 (0.995); FBP1 (0.988); GLC7 (0.974); TOS3 (0.962); SCP160 (0.962); VPS34 (0.911); VPS30 (0.904); MIG1 (0.902); VPS15 (0.901); ELM1 (0.892); TOR1 (0.891); SNF7 (0.882); MDG1 (0.867); CRP1 (0.867); KOG1 (0.861); CAT8 (0.85)
Homologues (species, bitscore): PRKAG2 (Homo sapiens, 194.5); Prkag2 (Mus musculus, 197.6); zgc:153329 (Danio rerio, 205.3); prkag1 (Xenopus tropicalis, 199.5); SNF4Agamma (Drosophila melanogaster, 195.7); aakg-1 (Caenorhabditis elegans, 188.7); SNF4 (Arabidopsis thaliana, 102.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:295364-296332:+ | gene-YGL115W_AKU4011 | rna-NM_001180980.1_AKU4011 | cds-NP_011400.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:109414-110382:- | gene-YGL115W_BG1 | rna-NM_001180980.1_BG1 | cds-NP_011400.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:297522-298490:+ | gene-YGL115W_Bruggeman | rna-NM_001180980.1_Bruggeman | cds-NP_011400.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:293044-294012:+ | gene-YGL115W_CAT1 | rna-NM_001180980.1_CAT1 | cds-NP_011400.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:298689-299657:+ | gene-YGL115W_CBS1585 | rna-NM_001180980.1_CBS1585 | cds-NP_011400.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:292993-293961:+ | gene-YGL115W_CBS436 | rna-NM_001180980.1_CBS436 | cds-NP_011400.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:283382-284350:+ | gene-YGL115W_CBS6412 | rna-NM_001180980.1_CBS6412 | cds-NP_011400.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:292981-293949:+ | gene-YGL115W_CBS6413 | rna-NM_001180980.1_CBS6413 | cds-NP_011400.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:292220-293188:+ | gene-YGL115W_CENPK1137D | rna-NM_001180980.1_CENPK1137D | cds-NP_011400.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:284431-285399:+ | gene-YGL115W_EthanolRed | rna-NM_001180980.1_EthanolRed | cds-NP_011400.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:286986-287954:+ | gene-YGL115W_FaliES1 | rna-NM_001180980.1_FaliES1 | cds-NP_011400.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000046.1:14186-15154:- | gene-YGL115W_JAY291 | rna-NM_001180980.1_JAY291 | cds-NP_011400.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:294492-295460:+ | gene-YGL115W_MUCL30387 | rna-NM_001180980.1_MUCL30387 | cds-NP_011400.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:297584-298552:+ | gene-YGL115W_MUCL30388 | rna-NM_001180980.1_MUCL30388 | cds-NP_011400.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:295202-296170:+ | gene-YGL115W_MUCL39482 | rna-NM_001180980.1_MUCL39482 | cds-NP_011400.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:298482-299450:+ | gene-YGL115W_MUCL42920 | rna-NM_001180980.1_MUCL42920 | cds-NP_011400.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:292033-293001:+ | gene-YGL115W_NCIM3186 | rna-NM_001180980.1_NCIM3186 | cds-NP_011400.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:286692-287660:+ | gene-YGL115W_NCYC1407 | rna-NM_001180980.1_NCYC1407 | cds-NP_011400.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:288077-289045:+ | gene-YGL115W_PE2H3 | rna-NM_001180980.1_PE2H3 | cds-NP_011400.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:293075-294043:+ | gene-YGL115W_PE2H4 | rna-NM_001180980.1_PE2H4 | cds-NP_011400.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:292033-293001:+ | gene-YGL115W_S288C | rna-NM_001180980.1_S288C | cds-NP_011400.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:36825-37793:+ | gene-YGL115W_SA1 | rna-NM_001180980.1_SA1 | cds-NP_011400.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:287198-288166:+ | gene-YGL115W_ThermosaccDry | rna-NM_001180980.1_ThermosaccDry | cds-NP_011400.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:396800-397768:+ | gene-YGL115W_VR1 | rna-NM_001180980.1_VR1 | cds-NP_011400.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:284600-285568:+ | gene-YGL115W_ZTW1 | rna-NM_001180980.1_ZTW1 | cds-NP_011400.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:290974-291942:+ | gene-YGL115W_Sparadoxus | rna-NM_001180980.1_Sparadoxus | cds-NP_011400.1_Sparadoxus | 92.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |