Gene name: SNF3
Reference locus (S288C): YDL194W
Gene biotype: protein_coding
Description: Mfs transporter, sp family, sugar:h+ symporter; High-affinity glucose transporter SNF3; Plasma membrane low glucose sensor, regulates glucose transport; high affinity sensor that contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication
Top 10 interactors (score): RGT1 (0.98); SNF1 (0.965); STD1 (0.963); GPR1 (0.938); HXK1 (0.932); HXK2 (0.93); GLK1 (0.927); RGT2 (0.902); MIG1 (0.902); MTH1 (0.892); CYC8 (0.853); GPA2 (0.851); GRR1 (0.842); SSY1 (0.774); YCK1 (0.77); SUC2 (0.759); HXT1 (0.758); HXT2 (0.751); SKS1 (0.743); CAT8 (0.717)
Homologues (species, bitscore): SLC2A13 (Homo sapiens, 160.2); Slc2a13 (Mus musculus, 153.7); slc2a8 (Danio rerio, 156.4); slc2a3 (Xenopus tropicalis, 164.9); Glut1 (Drosophila melanogaster, 154.1); hmit-1.3 (Caenorhabditis elegans, 140.6); STP2 (Arabidopsis thaliana, 194.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:95068-97722:+ | gene-YDL194W_AKU4011 | rna-NM_001180254.1_AKU4011 | cds-NP_010087.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:450951-453605:- | gene-YDL194W_BG1 | rna-NM_001180254.1_BG1 | cds-NP_010087.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:111428-114082:+ | gene-YDL194W_Bruggeman | rna-NM_001180254.1_Bruggeman | cds-NP_010087.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:113664-116318:+ | gene-YDL194W_CAT1 | rna-NM_001180254.1_CAT1 | cds-NP_010087.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:93920-96574:+ | gene-YDL194W_CBS1585 | rna-NM_001180254.1_CBS1585 | cds-NP_010087.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:308819-311473:+ | gene-YDL194W_CBS436 | rna-NM_001180254.1_CBS436 | cds-NP_010087.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:94034-96688:+ | gene-YDL194W_CBS6412 | rna-NM_001180254.1_CBS6412 | cds-NP_010087.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:111578-114232:+ | gene-YDL194W_CBS6413 | rna-NM_001180254.1_CBS6413 | cds-NP_010087.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:110251-112905:+ | gene-YDL194W_CENPK1137D | rna-NM_001180254.1_CENPK1137D | cds-NP_010087.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:107719-110373:+ | gene-YDL194W_EthanolRed | rna-NM_001180254.1_EthanolRed | cds-NP_010087.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:112325-114979:+ | gene-YDL194W_FaliES1 | rna-NM_001180254.1_FaliES1 | cds-NP_010087.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000344.1:4276-6930:- | gene-YDL194W_JAY291 | rna-NM_001180254.1_JAY291 | cds-NP_010087.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:109695-112349:+ | gene-YDL194W_MUCL30387 | rna-NM_001180254.1_MUCL30387 | cds-NP_010087.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:99509-102163:+ | gene-YDL194W_MUCL30388 | rna-NM_001180254.1_MUCL30388 | cds-NP_010087.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:94764-97418:+ | gene-YDL194W_MUCL39482 | rna-NM_001180254.1_MUCL39482 | cds-NP_010087.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:110833-113487:+ | gene-YDL194W_MUCL42920 | rna-NM_001180254.1_MUCL42920 | cds-NP_010087.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:111503-114157:+ | gene-YDL194W_NCIM3186 | rna-NM_001180254.1_NCIM3186 | cds-NP_010087.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:94721-97375:+ | gene-YDL194W_NCYC1407 | rna-NM_001180254.1_NCYC1407 | cds-NP_010087.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:102467-105121:+ | gene-YDL194W_PE2H3 | rna-NM_001180254.1_PE2H3 | cds-NP_010087.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:102477-105131:+ | gene-YDL194W_PE2H4 | rna-NM_001180254.1_PE2H4 | cds-NP_010087.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:111580-114234:+ | gene-YDL194W_S288C | rna-NM_001180254.1_S288C | cds-NP_010087.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000090.1:26071-28725:+ | gene-YDL194W_SA1 | rna-NM_001180254.1_SA1 | cds-NP_010087.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:112084-114738:+ | gene-YDL194W_ThermosaccDry | rna-NM_001180254.1_ThermosaccDry | cds-NP_010087.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:113018-115672:+ | gene-YDL194W_VR1 | rna-NM_001180254.1_VR1 | cds-NP_010087.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:110757-113411:+ | gene-YDL194W_ZTW1 | rna-NM_001180254.1_ZTW1 | cds-NP_010087.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:114176-116830:+ | gene-YDL194W_Sparadoxus | rna-NM_001180254.1_Sparadoxus | cds-NP_010087.1_Sparadoxus | 89.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |