Gene name: SNF2
Reference locus (S288C): YOR290C
Gene biotype: protein_coding
Description: Transcription regulatory protein SNF2; Catalytic subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; contains DNA-stimulated ATPase activity; functions interdependently in transcriptional activation with Snf5p and Snf6p
Top 10 interactors (score): SWP82 (0.999); SNF12 (0.999); SNF5 (0.999); ARP9 (0.999); SWI3 (0.999); SWI1 (0.999); ARP7 (0.999); SNF6 (0.999); RTT102 (0.998); SNF11 (0.998); RSC8 (0.997); TAF14 (0.997); ARP4 (0.994); ACT1 (0.991); RPO21 (0.99); SPT6 (0.983); RSC6 (0.979); GCN5 (0.971); HHT2 (0.966); HHF1 (0.957)
Homologues (species, bitscore): SMARCA4 (Homo sapiens, 821.2); Smarca4 (Mus musculus, 827.0); smarca4 (Danio rerio, 829.7); smarca2 (Xenopus tropicalis, 813.1); brm (Drosophila melanogaster, 828.9); swsn-4 (Caenorhabditis elegans, 816.2); ATCHR12 (Arabidopsis thaliana, 670.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:845607-850718:- | gene-YOR290C_AKU4011 | rna-NM_001183709.3_AKU4011 | cds-NP_014933.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:247560-252680:- | gene-YOR290C_BG1 | rna-NM_001183709.3_BG1 | cds-NP_014933.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:831033-836153:- | gene-YOR290C_Bruggeman | rna-NM_001183709.3_Bruggeman | cds-NP_014933.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:831748-836868:- | gene-YOR290C_CAT1 | rna-NM_001183709.3_CAT1 | cds-NP_014933.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:829440-834551:- | gene-YOR290C_CBS1585 | rna-NM_001183709.3_CBS1585 | cds-NP_014933.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:827265-832376:- | gene-YOR290C_CBS436 | rna-NM_001183709.3_CBS436 | cds-NP_014933.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:825180-830249:- | gene-YOR290C_CBS6412 | rna-NM_001183709.3_CBS6412 | cds-NP_014933.3_CBS6412 | 96.8 | 98.4 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:834334-839445:- | gene-YOR290C_CBS6413 | rna-NM_001183709.3_CBS6413 | cds-NP_014933.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:854936-860047:- | gene-YOR290C_CENPK1137D | rna-NM_001183709.3_CENPK1137D | cds-NP_014933.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:821535-826626:- | gene-YOR290C_EthanolRed | rna-NM_001183709.3_EthanolRed | cds-NP_014933.3_EthanolRed | 98.7 | 99.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:827133-832244:- | gene-YOR290C_FaliES1 | rna-NM_001183709.3_FaliES1 | cds-NP_014933.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:170955-176075:+ | gene-YOR290C_JAY291 | rna-NM_001183709.3_JAY291 | cds-NP_014933.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:835271-840400:- | gene-YOR290C_MUCL30387 | rna-NM_001183709.3_MUCL30387 | cds-NP_014933.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:843251-848380:- | gene-YOR290C_MUCL30388 | rna-NM_001183709.3_MUCL30388 | cds-NP_014933.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:835969-841080:- | gene-YOR290C_MUCL39482 | rna-NM_001183709.3_MUCL39482 | cds-NP_014933.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:845449-850569:- | gene-YOR290C_MUCL42920 | rna-NM_001183709.3_MUCL42920 | cds-NP_014933.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:855036-860147:- | gene-YOR290C_NCIM3186 | rna-NM_001183709.3_NCIM3186 | cds-NP_014933.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:836981-842092:- | gene-YOR290C_NCYC1407 | rna-NM_001183709.3_NCYC1407 | cds-NP_014933.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:835242-840362:- | gene-YOR290C_PE2H3 | rna-NM_001183709.3_PE2H3 | cds-NP_014933.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:851590-856710:- | gene-YOR290C_PE2H4 | rna-NM_001183709.3_PE2H4 | cds-NP_014933.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:855147-860258:- | gene-YOR290C_S288C | rna-NM_001183709.3_S288C | cds-NP_014933.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:264806-269926:- | gene-YOR290C_SA1 | rna-NM_001183709.3_SA1 | cds-NP_014933.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:826316-831427:- | gene-YOR290C_ThermosaccDry | rna-NM_001183709.3_ThermosaccDry | cds-NP_014933.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:889685-894805:- | gene-YOR290C_VR1 | rna-NM_001183709.3_VR1 | cds-NP_014933.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:559204-564315:- | gene-YOR290C_ZTW1 | rna-NM_001183709.3_ZTW1 | cds-NP_014933.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:833073-838220:- | gene-YOR290C_Sparadoxus | rna-NM_001183709.3_Sparadoxus | cds-NP_014933.3_Sparadoxus | 88.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |