Gene name: SNF12
Reference locus (S288C): YNR023W
Gene biotype: protein_coding
Description: Transcription regulatory protein SNF12; 73 kDa subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; relocates to the cytosol under hypoxic conditions; deletion mutants are temperature-sensitive; SNF12 has a paralog, RSC6, that arose from the whole genome duplication
Top 10 interactors (score): SNF2 (0.999); SWP82 (0.999); SNF5 (0.999); ARP9 (0.999); SWI1 (0.999); ARP7 (0.999); SNF6 (0.999); SWI3 (0.999); SNF11 (0.997); TAF14 (0.994); ARP4 (0.994); RTT102 (0.992); STH1 (0.99); RSC8 (0.984); RSC2 (0.943); RSC1 (0.929); SNZ1 (0.917); SFH1 (0.885); HIS3 (0.78); GCN5 (0.761)
Homologues (species, bitscore): SMARCD3 (Homo sapiens, 76.6); Smarcd3 (Mus musculus, 76.6); smarcd3a (Danio rerio, 76.6); smarcd1 (Xenopus tropicalis, 75.1); Bap60 (Drosophila melanogaster, 62.0); swsn-2.1 (Caenorhabditis elegans, 58.2); AT3G01890 (Arabidopsis thaliana, 79.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:654069-655769:+ | gene-YNR023W_AKU4011 | rna-NM_001183200.1_AKU4011 | cds-NP_014420.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:561933-563633:+ | gene-YNR023W_BG1 | rna-NM_001183200.1_BG1 | cds-NP_014420.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:671520-673220:+ | gene-YNR023W_Bruggeman | rna-NM_001183200.1_Bruggeman | cds-NP_014420.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:705778-707478:+ | gene-YNR023W_CAT1 | rna-NM_001183200.1_CAT1 | cds-NP_014420.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:659824-661524:+ | gene-YNR023W_CBS1585 | rna-NM_001183200.1_CBS1585 | cds-NP_014420.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:721492-723192:+ | gene-YNR023W_CBS436 | rna-NM_001183200.1_CBS436 | cds-NP_014420.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:649012-650712:+ | gene-YNR023W_CBS6412 | rna-NM_001183200.1_CBS6412 | cds-NP_014420.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:650717-652417:+ | gene-YNR023W_CBS6413 | rna-NM_001183200.1_CBS6413 | cds-NP_014420.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:664171-665871:+ | gene-YNR023W_CENPK1137D | rna-NM_001183200.1_CENPK1137D | cds-NP_014420.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:655761-657461:+ | gene-YNR023W_EthanolRed | rna-NM_001183200.1_EthanolRed | cds-NP_014420.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:646964-648664:+ | gene-YNR023W_FaliES1 | rna-NM_001183200.1_FaliES1 | cds-NP_014420.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:54117-55817:- | gene-YNR023W_JAY291 | rna-NM_001183200.1_JAY291 | cds-NP_014420.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:669277-670977:+ | gene-YNR023W_MUCL30387 | rna-NM_001183200.1_MUCL30387 | cds-NP_014420.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:710100-711800:+ | gene-YNR023W_MUCL30388 | rna-NM_001183200.1_MUCL30388 | cds-NP_014420.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:651324-653024:+ | gene-YNR023W_MUCL39482 | rna-NM_001183200.1_MUCL39482 | cds-NP_014420.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:655494-657194:+ | gene-YNR023W_MUCL42920 | rna-NM_001183200.1_MUCL42920 | cds-NP_014420.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:670387-672087:+ | gene-YNR023W_NCIM3186 | rna-NM_001183200.1_NCIM3186 | cds-NP_014420.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:653832-655532:+ | gene-YNR023W_NCYC1407 | rna-NM_001183200.1_NCYC1407 | cds-NP_014420.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:654919-656619:+ | gene-YNR023W_PE2H3 | rna-NM_001183200.1_PE2H3 | cds-NP_014420.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:656237-657937:+ | gene-YNR023W_PE2H4 | rna-NM_001183200.1_PE2H4 | cds-NP_014420.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:670418-672118:+ | gene-YNR023W_S288C | rna-NM_001183200.1_S288C | cds-NP_014420.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000074.1:54267-55967:- | gene-YNR023W_SA1 | rna-NM_001183200.1_SA1 | cds-NP_014420.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:647301-649001:+ | gene-YNR023W_ThermosaccDry | rna-NM_001183200.1_ThermosaccDry | cds-NP_014420.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:689298-690998:+ | gene-YNR023W_VR1 | rna-NM_001183200.1_VR1 | cds-NP_014420.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:556712-558412:+ | gene-YNR023W_ZTW1 | rna-NM_001183200.1_ZTW1 | cds-NP_014420.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:661385-663085:+ | gene-YNR023W_Sparadoxus | rna-NM_001183200.1_Sparadoxus | cds-NP_014420.1_Sparadoxus | 86.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |