Gene name: SNF11
Reference locus (S288C): YDR073W
Gene biotype: protein_coding
Description: Transcription regulatory protein SNF11; Subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; interacts with a highly conserved 40-residue sequence of Snf2p; relocates to the cytosol under hypoxic conditions
Top 10 interactors (score): SNF6 (0.999); SNF2 (0.998); SNF12 (0.997); SNF5 (0.996); TAF14 (0.995); ARP7 (0.993); SWI3 (0.993); SWP82 (0.993); SWI1 (0.989); ARP9 (0.985); RTT102 (0.984); IPT1 (0.792); SER3 (0.79); PAA1 (0.689); ITT1 (0.628); YHR140W (0.571); FMP16 (0.568); YBR284W (0.487); IRC10 (0.483); HEM12 (0.464)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:569991-570476:+ | gene-YDR073W_AKU4011 | rna-NM_001180381.3_AKU4011 | cds-NP_010358.3_AKU4011 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:554883-555368:- | gene-YDR073W_BG1 | rna-NM_001180381.3_BG1 | cds-NP_010358.3_BG1 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:602287-602772:+ | gene-YDR073W_Bruggeman | rna-NM_001180381.3_Bruggeman | cds-NP_010358.3_Bruggeman | 95.2 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:585866-586351:+ | gene-YDR073W_CAT1 | rna-NM_001180381.3_CAT1 | cds-NP_010358.3_CAT1 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:560944-561429:+ | gene-YDR073W_CBS1585 | rna-NM_001180381.3_CBS1585 | cds-NP_010358.3_CBS1585 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:586117-586590:+ | gene-YDR073W_CBS436 | rna-NM_001180381.3_CBS436 | cds-NP_010358.3_CBS436 | 92.9 | 92.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:557354-557839:+ | gene-YDR073W_CBS6412 | rna-NM_001180381.3_CBS6412 | cds-NP_010358.3_CBS6412 | 95.0 | 95.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:586021-586506:+ | gene-YDR073W_CBS6413 | rna-NM_001180381.3_CBS6413 | cds-NP_010358.3_CBS6413 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:591462-591959:+ | gene-YDR073W_CENPK1137D | rna-NM_001180381.3_CENPK1137D | cds-NP_010358.3_CENPK1137D | 97.6 | 97.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:571804-572331:+ | gene-YDR073W_EthanolRed | rna-NM_001180381.3_EthanolRed | cds-NP_010358.3_EthanolRed | 96.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:578599-579071:+ | gene-YDR073W_FaliES1 | rna-NM_001180381.3_FaliES1 | cds-NP_010358.3_FaliES1 | 85.0 | 91.9 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:52068-52541:- | gene-YDR073W_JAY291 | rna-NM_001180381.3_JAY291 | cds-NP_010358.3_JAY291 | 92.9 | 92.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:586971-587456:+ | gene-YDR073W_MUCL30387 | rna-NM_001180381.3_MUCL30387 | cds-NP_010358.3_MUCL30387 | 95.2 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:577369-577854:+ | gene-YDR073W_MUCL30388 | rna-NM_001180381.3_MUCL30388 | cds-NP_010358.3_MUCL30388 | 95.2 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:562315-562800:+ | gene-YDR073W_MUCL39482 | rna-NM_001180381.3_MUCL39482 | cds-NP_010358.3_MUCL39482 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:493023-493508:+ | gene-YDR073W_MUCL42920 | rna-NM_001180381.3_MUCL42920 | cds-NP_010358.3_MUCL42920 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:592362-592871:+ | gene-YDR073W_NCIM3186 | rna-NM_001180381.3_NCIM3186 | cds-NP_010358.3_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:561236-561721:+ | gene-YDR073W_NCYC1407 | rna-NM_001180381.3_NCYC1407 | cds-NP_010358.3_NCYC1407 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:580894-581379:+ | gene-YDR073W_PE2H3 | rna-NM_001180381.3_PE2H3 | cds-NP_010358.3_PE2H3 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:580199-580684:+ | gene-YDR073W_PE2H4 | rna-NM_001180381.3_PE2H4 | cds-NP_010358.3_PE2H4 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:592439-592948:+ | gene-YDR073W_S288C | rna-NM_001180381.3_S288C | cds-NP_010358.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:52560-53033:- | gene-YDR073W_SA1 | rna-NM_001180381.3_SA1 | cds-NP_010358.3_SA1 | 92.9 | 92.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000087.1:1-453:- | gene-YDR073W_ThermosaccDry | rna-NM_001180381.3_ThermosaccDry | cds-NP_010358.3_ThermosaccDry | 82.3 | 85.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:590691-591176:+ | gene-YDR073W_VR1 | rna-NM_001180381.3_VR1 | cds-NP_010358.3_VR1 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:575590-576075:+ | gene-YDR073W_ZTW1 | rna-NM_001180381.3_ZTW1 | cds-NP_010358.3_ZTW1 | 95.0 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:580446-580931:+ | gene-YDR073W_Sparadoxus | rna-NM_001180381.3_Sparadoxus | cds-NP_010358.3_Sparadoxus | 86.8 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |