Gene name: SND3
Reference locus (S288C): YBR106W
Gene biotype: protein_coding
Description: Protein involved in SRP-independent targeting of substrates to the ER; component of an alternative ER targeting pathway that has partial functional redundancy with the GET pathway; preference for substrates with downstream transmembrane domains; interacts with Snd1p, Env10p/Snd2p, and Sec61p-translocon subunits; can compensate for loss of SRP; role in phosphate transport, interacting with pho88, and in the maturation of secretory proteins
Top 10 interactors (score): ENV10 (0.892); PHO86 (0.876); SND1 (0.865); LPL1 (0.811); YDL121C (0.805); VTC4 (0.786); ERV25 (0.781); GET1 (0.777); PHO87 (0.762); IST2 (0.721); PUP1 (0.71); PHO91 (0.709); EMP24 (0.677); SEC61 (0.673); PHO89 (0.671); YPL225W (0.663); GET3 (0.647); PHO84 (0.633); PRE6 (0.625); SCS2 (0.625)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:435026-435592:+ | gene-YBR106W_AKU4011 | rna-NM_001178454.1_AKU4011 | cds-NP_009664.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:426062-426628:+ | gene-YBR106W_BG1 | rna-NM_001178454.1_BG1 | cds-NP_009664.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:436798-437364:+ | gene-YBR106W_Bruggeman | rna-NM_001178454.1_Bruggeman | cds-NP_009664.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:439569-440135:+ | gene-YBR106W_CAT1 | rna-NM_001178454.1_CAT1 | cds-NP_009664.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:427310-427876:+ | gene-YBR106W_CBS1585 | rna-NM_001178454.1_CBS1585 | cds-NP_009664.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:435427-435993:+ | gene-YBR106W_CBS436 | rna-NM_001178454.1_CBS436 | cds-NP_009664.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:525538-526104:+ | gene-YBR106W_CBS6412 | rna-NM_001178454.1_CBS6412 | cds-NP_009664.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:432450-433016:+ | gene-YBR106W_CBS6413 | rna-NM_001178454.1_CBS6413 | cds-NP_009664.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:444556-445122:+ | gene-YBR106W_CENPK1137D | rna-NM_001178454.1_CENPK1137D | cds-NP_009664.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:561815-562381:+ | gene-YBR106W_EthanolRed | rna-NM_001178454.1_EthanolRed | cds-NP_009664.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:451098-451664:+ | gene-YBR106W_FaliES1 | rna-NM_001178454.1_FaliES1 | cds-NP_009664.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000312.1:22009-22575:+ | gene-YBR106W_JAY291 | rna-NM_001178454.1_JAY291 | cds-NP_009664.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:438832-439398:+ | gene-YBR106W_MUCL30387 | rna-NM_001178454.1_MUCL30387 | cds-NP_009664.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:437836-438402:+ | gene-YBR106W_MUCL30388 | rna-NM_001178454.1_MUCL30388 | cds-NP_009664.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:425453-426019:+ | gene-YBR106W_MUCL39482 | rna-NM_001178454.1_MUCL39482 | cds-NP_009664.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:434512-435078:+ | gene-YBR106W_MUCL42920 | rna-NM_001178454.1_MUCL42920 | cds-NP_009664.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:452455-453021:+ | gene-YBR106W_NCIM3186 | rna-NM_001178454.1_NCIM3186 | cds-NP_009664.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:428233-428799:+ | gene-YBR106W_NCYC1407 | rna-NM_001178454.1_NCYC1407 | cds-NP_009664.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:440854-441420:+ | gene-YBR106W_PE2H3 | rna-NM_001178454.1_PE2H3 | cds-NP_009664.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:438530-439096:+ | gene-YBR106W_PE2H4 | rna-NM_001178454.1_PE2H4 | cds-NP_009664.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:452658-453224:+ | gene-YBR106W_S288C | rna-NM_001178454.1_S288C | cds-NP_009664.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:24487-25053:- | gene-YBR106W_SA1 | rna-NM_001178454.1_SA1 | cds-NP_009664.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:450105-450671:+ | gene-YBR106W_ThermosaccDry | rna-NM_001178454.1_ThermosaccDry | cds-NP_009664.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:432113-432679:+ | gene-YBR106W_VR1 | rna-NM_001178454.1_VR1 | cds-NP_009664.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:425764-426330:+ | gene-YBR106W_ZTW1 | rna-NM_001178454.1_ZTW1 | cds-NP_009664.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:462705-463271:+ | gene-YBR106W_Sparadoxus | rna-NM_001178454.1_Sparadoxus | cds-NP_009664.1_Sparadoxus | 95.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |