Gene name: SND2
Reference locus (S288C): YLR065C
Gene biotype: protein_coding
Description: Protein involved in SRP-independent targeting of substrates to the ER; component of an alternative ER targeting pathway that has partial functional redundancy with the GET pathway; preference for substrates with downstream transmembrane domains; interacts with Snd1p, Pho88p/Snd3p, and Sec61p-translocon subunits; can compensate for loss of SRP; role in the late endosome-vacuole interface; putative role in secretory protein quality control; Belongs to the TMEM208 family
Top 10 interactors (score): GET1 (0.955); SND1 (0.944); PHO88 (0.892); PRE4 (0.851); GET3 (0.85); GET2 (0.841); YAR028W (0.817); GET4 (0.816); ENV9 (0.763); MIL1 (0.749); YDR018C (0.748); YBR137W (0.746); MST28 (0.745); SEC61 (0.742); TPO5 (0.72); YSY6 (0.718); ENV11 (0.715); MAM3 (0.715); UIP3 (0.711); SLY41 (0.709)
Homologues (species, bitscore): AT4G30500 (Arabidopsis thaliana, 51.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:248845-249390:- | gene-YLR065C_AKU4011 | rna-NM_001181952.1_AKU4011 | cds-NP_013166.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:211986-212531:- | gene-YLR065C_BG1 | rna-NM_001181952.1_BG1 | cds-NP_013166.1_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:258754-259299:- | gene-YLR065C_Bruggeman | rna-NM_001181952.1_Bruggeman | cds-NP_013166.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:259071-259616:- | gene-YLR065C_CAT1 | rna-NM_001181952.1_CAT1 | cds-NP_013166.1_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:255961-256506:- | gene-YLR065C_CBS1585 | rna-NM_001181952.1_CBS1585 | cds-NP_013166.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:246583-247128:- | gene-YLR065C_CBS436 | rna-NM_001181952.1_CBS436 | cds-NP_013166.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:254399-254944:- | gene-YLR065C_CBS6412 | rna-NM_001181952.1_CBS6412 | cds-NP_013166.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:256232-256777:- | gene-YLR065C_CBS6413 | rna-NM_001181952.1_CBS6413 | cds-NP_013166.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:251395-251940:- | gene-YLR065C_CENPK1137D | rna-NM_001181952.1_CENPK1137D | cds-NP_013166.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:248366-248911:- | gene-YLR065C_EthanolRed | rna-NM_001181952.1_EthanolRed | cds-NP_013166.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:248242-248787:- | gene-YLR065C_FaliES1 | rna-NM_001181952.1_FaliES1 | cds-NP_013166.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:23177-23722:- | gene-YLR065C_JAY291 | rna-NM_001181952.1_JAY291 | cds-NP_013166.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:256123-256668:- | gene-YLR065C_MUCL30387 | rna-NM_001181952.1_MUCL30387 | cds-NP_013166.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:263766-264311:- | gene-YLR065C_MUCL30388 | rna-NM_001181952.1_MUCL30388 | cds-NP_013166.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:256472-257017:- | gene-YLR065C_MUCL39482 | rna-NM_001181952.1_MUCL39482 | cds-NP_013166.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:256393-256938:- | gene-YLR065C_MUCL42920 | rna-NM_001181952.1_MUCL42920 | cds-NP_013166.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:266347-266892:- | gene-YLR065C_NCIM3186 | rna-NM_001181952.1_NCIM3186 | cds-NP_013166.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:248547-249092:- | gene-YLR065C_NCYC1407 | rna-NM_001181952.1_NCYC1407 | cds-NP_013166.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:254414-254959:- | gene-YLR065C_PE2H3 | rna-NM_001181952.1_PE2H3 | cds-NP_013166.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:254155-254700:- | gene-YLR065C_PE2H4 | rna-NM_001181952.1_PE2H4 | cds-NP_013166.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:266373-266918:- | gene-YLR065C_S288C | rna-NM_001181952.1_S288C | cds-NP_013166.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:107272-107817:+ | gene-YLR065C_SA1 | rna-NM_001181952.1_SA1 | cds-NP_013166.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:248418-248963:- | gene-YLR065C_ThermosaccDry | rna-NM_001181952.1_ThermosaccDry | cds-NP_013166.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:262107-262652:- | gene-YLR065C_VR1 | rna-NM_001181952.1_VR1 | cds-NP_013166.1_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:247805-248350:- | gene-YLR065C_ZTW1 | rna-NM_001181952.1_ZTW1 | cds-NP_013166.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:256685-257230:- | gene-YLR065C_Sparadoxus | rna-NM_001181952.1_Sparadoxus | cds-NP_013166.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |