Gene name: SND1
Reference locus (S288C): YDR186C
Gene biotype: protein_coding
Description: Protein involved in SRP-independent targeting of substrates to the ER; component of an alternative ER targeting pathway that has partial functional redundancy with the GET pathway; preference for substrates with downstream transmembrane domains; interacts with Env10p/Snd2p and Pho88p/Snd3p; can compensate for loss of SRP; may interact with ribosomes, based on co-purification experiments; GFP-fusion protein localizes to the cytoplasm
Top 10 interactors (score): ENV10 (0.944); PHO88 (0.865); PTC4 (0.792); YBR137W (0.76); GET4 (0.72); GET2 (0.7); SEC65 (0.698); MDY2 (0.695); SGT2 (0.693); GET1 (0.663); GET3 (0.629); SEC61 (0.614); PBR1 (0.573); YSY6 (0.56); RGA1 (0.495); RAD6 (0.483); OLE1 (0.465); GAS1 (0.45); SNF4 (0.405); ATG33 (0.4)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:801390-804023:- | gene-YDR186C_AKU4011 | rna-NM_001180494.3_AKU4011 | cds-NP_010472.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:321779-324412:+ | gene-YDR186C_BG1 | rna-NM_001180494.3_BG1 | cds-NP_010472.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:833809-836442:- | gene-YDR186C_Bruggeman | rna-NM_001180494.3_Bruggeman | cds-NP_010472.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:821056-823689:- | gene-YDR186C_CAT1 | rna-NM_001180494.3_CAT1 | cds-NP_010472.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:791755-794388:- | gene-YDR186C_CBS1585 | rna-NM_001180494.3_CBS1585 | cds-NP_010472.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:820738-823371:- | gene-YDR186C_CBS436 | rna-NM_001180494.3_CBS436 | cds-NP_010472.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:788559-791192:- | gene-YDR186C_CBS6412 | rna-NM_001180494.3_CBS6412 | cds-NP_010472.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:819102-821735:- | gene-YDR186C_CBS6413 | rna-NM_001180494.3_CBS6413 | cds-NP_010472.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:831693-834326:- | gene-YDR186C_CENPK1137D | rna-NM_001180494.3_CENPK1137D | cds-NP_010472.3_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:802156-804780:- | gene-YDR186C_EthanolRed | rna-NM_001180494.3_EthanolRed | cds-NP_010472.3_EthanolRed | 99.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:810368-812992:- | gene-YDR186C_FaliES1 | rna-NM_001180494.3_FaliES1 | cds-NP_010472.3_FaliES1 | 99.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:36362-38995:+ | gene-YDR186C_JAY291 | rna-NM_001180494.3_JAY291 | cds-NP_010472.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:819455-822088:- | gene-YDR186C_MUCL30387 | rna-NM_001180494.3_MUCL30387 | cds-NP_010472.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:807697-810330:- | gene-YDR186C_MUCL30388 | rna-NM_001180494.3_MUCL30388 | cds-NP_010472.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:793202-795835:- | gene-YDR186C_MUCL39482 | rna-NM_001180494.3_MUCL39482 | cds-NP_010472.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:731897-734530:- | gene-YDR186C_MUCL42920 | rna-NM_001180494.3_MUCL42920 | cds-NP_010472.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:832782-835415:- | gene-YDR186C_NCIM3186 | rna-NM_001180494.3_NCIM3186 | cds-NP_010472.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:796335-798968:- | gene-YDR186C_NCYC1407 | rna-NM_001180494.3_NCYC1407 | cds-NP_010472.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:813086-815719:- | gene-YDR186C_PE2H3 | rna-NM_001180494.3_PE2H3 | cds-NP_010472.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:812391-815024:- | gene-YDR186C_PE2H4 | rna-NM_001180494.3_PE2H4 | cds-NP_010472.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:832859-835492:- | gene-YDR186C_S288C | rna-NM_001180494.3_S288C | cds-NP_010472.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:178570-181203:- | gene-YDR186C_SA1 | rna-NM_001180494.3_SA1 | cds-NP_010472.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:808523-811147:- | gene-YDR186C_ThermosaccDry | rna-NM_001180494.3_ThermosaccDry | cds-NP_010472.3_ThermosaccDry | 99.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:823751-826384:- | gene-YDR186C_VR1 | rna-NM_001180494.3_VR1 | cds-NP_010472.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:71235-73868:- | gene-YDR186C_ZTW1 | rna-NM_001180494.3_ZTW1 | cds-NP_010472.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:813482-816094:- | gene-YDR186C_Sparadoxus | rna-NM_001180494.3_Sparadoxus | cds-NP_010472.3_Sparadoxus | 88.9 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |