Gene name: SNC2
Reference locus (S288C): YOR327C
Gene biotype: protein_coding
Description: Synaptobrevin homolog 2; Vesicle membrane receptor protein (v-SNARE); involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; Snc2p levels regulated by Vps45p; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins; SNC2 has a paralog, SNC1, that arose from the whole genome duplication
Top 10 interactors (score): SSO2 (0.999); TLG1 (0.999); SSO1 (0.999); SEC9 (0.999); VTI1 (0.997); TLG2 (0.997); SEC1 (0.995); SED5 (0.993); SPO20 (0.992); YKT6 (0.988); VPS45 (0.986); BET1 (0.975); MSO1 (0.974); SEC22 (0.974); BOS1 (0.969); SEC17 (0.966); SNC1 (0.965); VAM3 (0.964); SEC6 (0.957); PEP12 (0.954)
Homologues (species, bitscore): VAMP4 (Homo sapiens, 81.3); Vamp4 (Mus musculus, 79.3); vamp4 (Danio rerio, 94.4); vamp4 (Xenopus tropicalis, 88.2); Syb (Drosophila melanogaster, 73.6); snb-1 (Caenorhabditis elegans, 73.2); HAT24 (Arabidopsis thaliana, 74.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:921226-921573:- | gene-YOR327C_AKU4011 | rna-NM_001183747.3_AKU4011 | cds-NP_014972.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:323286-323633:- | gene-YOR327C_BG1 | rna-NM_001183747.3_BG1 | cds-NP_014972.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:906633-906980:- | gene-YOR327C_Bruggeman | rna-NM_001183747.3_Bruggeman | cds-NP_014972.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:907354-907701:- | gene-YOR327C_CAT1 | rna-NM_001183747.3_CAT1 | cds-NP_014972.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:905048-905395:- | gene-YOR327C_CBS1585 | rna-NM_001183747.3_CBS1585 | cds-NP_014972.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:902870-903217:- | gene-YOR327C_CBS436 | rna-NM_001183747.3_CBS436 | cds-NP_014972.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:900758-901105:- | gene-YOR327C_CBS6412 | rna-NM_001183747.3_CBS6412 | cds-NP_014972.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:909888-910235:- | gene-YOR327C_CBS6413 | rna-NM_001183747.3_CBS6413 | cds-NP_014972.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:930509-930856:- | gene-YOR327C_CENPK1137D | rna-NM_001183747.3_CENPK1137D | cds-NP_014972.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:897140-897487:- | gene-YOR327C_EthanolRed | rna-NM_001183747.3_EthanolRed | cds-NP_014972.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:902763-903110:- | gene-YOR327C_FaliES1 | rna-NM_001183747.3_FaliES1 | cds-NP_014972.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:100154-100501:+ | gene-YOR327C_JAY291 | rna-NM_001183747.3_JAY291 | cds-NP_014972.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:910875-911222:- | gene-YOR327C_MUCL30387 | rna-NM_001183747.3_MUCL30387 | cds-NP_014972.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:918889-919236:- | gene-YOR327C_MUCL30388 | rna-NM_001183747.3_MUCL30388 | cds-NP_014972.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:911593-911940:- | gene-YOR327C_MUCL39482 | rna-NM_001183747.3_MUCL39482 | cds-NP_014972.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:921048-921395:- | gene-YOR327C_MUCL42920 | rna-NM_001183747.3_MUCL42920 | cds-NP_014972.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:930623-930970:- | gene-YOR327C_NCIM3186 | rna-NM_001183747.3_NCIM3186 | cds-NP_014972.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:912594-912941:- | gene-YOR327C_NCYC1407 | rna-NM_001183747.3_NCYC1407 | cds-NP_014972.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:910818-911165:- | gene-YOR327C_PE2H3 | rna-NM_001183747.3_PE2H3 | cds-NP_014972.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:927170-927517:- | gene-YOR327C_PE2H4 | rna-NM_001183747.3_PE2H4 | cds-NP_014972.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:930734-931081:- | gene-YOR327C_S288C | rna-NM_001183747.3_S288C | cds-NP_014972.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:41062-41409:- | gene-YOR327C_SA1 | rna-NM_001183747.3_SA1 | cds-NP_014972.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:901946-902293:- | gene-YOR327C_ThermosaccDry | rna-NM_001183747.3_ThermosaccDry | cds-NP_014972.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:965239-965586:- | gene-YOR327C_VR1 | rna-NM_001183747.3_VR1 | cds-NP_014972.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:634817-635164:- | gene-YOR327C_ZTW1 | rna-NM_001183747.3_ZTW1 | cds-NP_014972.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:909167-909514:- | gene-YOR327C_Sparadoxus | rna-NM_001183747.3_Sparadoxus | cds-NP_014972.3_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |