Gene name: SNC1
Reference locus (S288C): YAL030W
Gene biotype: protein_coding
Description: Synaptobrevin homolog 1; Vesicle membrane receptor protein (v-SNARE); involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; proposed to be involved in endocytosis; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins; SNC1 has a paralog, SNC2, that arose from the whole genome duplication
Top 10 interactors (score): SSO2 (0.999); TLG1 (0.999); SSO1 (0.999); SEC9 (0.999); TLG2 (0.997); VTI1 (0.995); SPO20 (0.995); YKT6 (0.993); SED5 (0.991); SEC22 (0.987); MSO1 (0.986); BET1 (0.983); BOS1 (0.982); VAM3 (0.981); GOS1 (0.98); PEP12 (0.98); SEC4 (0.975); SEC17 (0.972); UFE1 (0.969); USE1 (0.969)
Homologues (species, bitscore): VAMP2 (Homo sapiens, 80.5); Vamp2 (Mus musculus, 80.5); vamp4 (Danio rerio, 94.4); vamp4 (Xenopus tropicalis, 86.3); Syb (Drosophila melanogaster, 72.4); snb-1 (Caenorhabditis elegans, 75.1); HAT24 (Arabidopsis thaliana, 76.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:72412-72878:+ | gene-YAL030W_AKU4011 | rna-NM_001178175.1_AKU4011 | cds-NP_009372.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:59540-60006:+ | gene-YAL030W_BG1 | rna-NM_001178175.1_BG1 | cds-NP_009372.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:87292-87758:+ | gene-YAL030W_Bruggeman | rna-NM_001178175.1_Bruggeman | cds-NP_009372.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:73638-74104:+ | gene-YAL030W_CAT1 | rna-NM_001178175.1_CAT1 | cds-NP_009372.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:85429-85895:+ | gene-YAL030W_CBS1585 | rna-NM_001178175.1_CBS1585 | cds-NP_009372.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:85679-86145:+ | gene-YAL030W_CBS436 | rna-NM_001178175.1_CBS436 | cds-NP_009372.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:71575-72041:+ | gene-YAL030W_CBS6412 | rna-NM_001178175.1_CBS6412 | cds-NP_009372.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:83694-84160:+ | gene-YAL030W_CBS6413 | rna-NM_001178175.1_CBS6413 | cds-NP_009372.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:87376-87842:+ | gene-YAL030W_CENPK1137D | rna-NM_001178175.1_CENPK1137D | cds-NP_009372.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:73833-74299:+ | gene-YAL030W_EthanolRed | rna-NM_001178175.1_EthanolRed | cds-NP_009372.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:88456-88922:+ | gene-YAL030W_FaliES1 | rna-NM_001178175.1_FaliES1 | cds-NP_009372.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:59730-60196:+ | gene-YAL030W_JAY291 | rna-NM_001178175.1_JAY291 | cds-NP_009372.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:88384-88850:+ | gene-YAL030W_MUCL30387 | rna-NM_001178175.1_MUCL30387 | cds-NP_009372.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:84931-85397:+ | gene-YAL030W_MUCL30388 | rna-NM_001178175.1_MUCL30388 | cds-NP_009372.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:84215-84681:+ | gene-YAL030W_MUCL39482 | rna-NM_001178175.1_MUCL39482 | cds-NP_009372.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:86587-87053:+ | gene-YAL030W_MUCL42920 | rna-NM_001178175.1_MUCL42920 | cds-NP_009372.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:87163-87629:+ | gene-YAL030W_NCIM3186 | rna-NM_001178175.1_NCIM3186 | cds-NP_009372.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:72094-72560:+ | gene-YAL030W_NCYC1407 | rna-NM_001178175.1_NCYC1407 | cds-NP_009372.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:74000-74466:+ | gene-YAL030W_PE2H3 | rna-NM_001178175.1_PE2H3 | cds-NP_009372.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:73719-74185:+ | gene-YAL030W_PE2H4 | rna-NM_001178175.1_PE2H4 | cds-NP_009372.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:87286-87752:+ | gene-YAL030W_S288C | rna-NM_001178175.1_S288C | cds-NP_009372.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000059.1:16410-16876:+ | gene-YAL030W_SA1 | rna-NM_001178175.1_SA1 | cds-NP_009372.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:87974-88440:+ | gene-YAL030W_ThermosaccDry | rna-NM_001178175.1_ThermosaccDry | cds-NP_009372.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:89254-89720:+ | gene-YAL030W_VR1 | rna-NM_001178175.1_VR1 | cds-NP_009372.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:59793-60259:+ | gene-YAL030W_ZTW1 | rna-NM_001178175.1_ZTW1 | cds-NP_009372.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:77352-77818:+ | gene-YAL030W_Sparadoxus | rna-NM_001178175.1_Sparadoxus | cds-NP_009372.1_Sparadoxus | 93.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |