Gene name: SNA3
Reference locus (S288C): YJL151C
Gene biotype: protein_coding
Description: Protein involved in efficient MVB sorting of proteins to the vacuole; may function as an RSP5 adapter protein for MVB cargos; integral membrane protein localized to vacuolar intralumenal vesicles
Top 10 interactors (score): RSP5 (0.999); SNA2 (0.999); UBI4 (0.878); CPS1 (0.865); RPL40B (0.808); RPL40A (0.8); RPS31 (0.8); PPN1 (0.779); DOA4 (0.779); COS5 (0.747); BSD2 (0.746); TUL1 (0.744); BRO1 (0.718); PMP3 (0.708); FUR4 (0.697); HSE1 (0.696); VPS27 (0.695); STE3 (0.692); STP22 (0.67); BUL1 (0.659)
Homologues (species, bitscore): ZK632.10 (Caenorhabditis elegans, 51.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:124673-125074:- | gene-YJL151C_AKU4011 | rna-NM_001181584.1_AKU4011 | cds-NP_012384.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:488647-489048:+ | gene-YJL151C_BG1 | rna-NM_001181584.1_BG1 | cds-NP_012384.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:136509-136910:- | gene-YJL151C_Bruggeman | rna-NM_001181584.1_Bruggeman | cds-NP_012384.1_Bruggeman | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:140291-140692:- | gene-YJL151C_CAT1 | rna-NM_001181584.1_CAT1 | cds-NP_012384.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:130306-130707:- | gene-YJL151C_CBS1585 | rna-NM_001181584.1_CBS1585 | cds-NP_012384.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:155059-155460:- | gene-YJL151C_CBS436 | rna-NM_001181584.1_CBS436 | cds-NP_012384.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:126716-127117:- | gene-YJL151C_CBS6412 | rna-NM_001181584.1_CBS6412 | cds-NP_012384.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:127779-128180:- | gene-YJL151C_CBS6413 | rna-NM_001181584.1_CBS6413 | cds-NP_012384.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:118765-119166:- | gene-YJL151C_CENPK1137D | rna-NM_001181584.1_CENPK1137D | cds-NP_012384.1_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:128831-129232:- | gene-YJL151C_EthanolRed | rna-NM_001181584.1_EthanolRed | cds-NP_012384.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:134309-134710:- | gene-YJL151C_FaliES1 | rna-NM_001181584.1_FaliES1 | cds-NP_012384.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000099.1:15483-15884:- | gene-YJL151C_JAY291 | rna-NM_001181584.1_JAY291 | cds-NP_012384.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:138780-139181:- | gene-YJL151C_MUCL30387 | rna-NM_001181584.1_MUCL30387 | cds-NP_012384.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:134814-135215:- | gene-YJL151C_MUCL30388 | rna-NM_001181584.1_MUCL30388 | cds-NP_012384.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:129048-129449:- | gene-YJL151C_MUCL39482 | rna-NM_001181584.1_MUCL39482 | cds-NP_012384.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:134569-134970:- | gene-YJL151C_MUCL42920 | rna-NM_001181584.1_MUCL42920 | cds-NP_012384.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:136351-136752:- | gene-YJL151C_NCIM3186 | rna-NM_001181584.1_NCIM3186 | cds-NP_012384.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:127657-128058:- | gene-YJL151C_NCYC1407 | rna-NM_001181584.1_NCYC1407 | cds-NP_012384.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:140465-140866:- | gene-YJL151C_PE2H3 | rna-NM_001181584.1_PE2H3 | cds-NP_012384.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:140103-140504:- | gene-YJL151C_PE2H4 | rna-NM_001181584.1_PE2H4 | cds-NP_012384.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:136372-136773:- | gene-YJL151C_S288C | rna-NM_001181584.1_S288C | cds-NP_012384.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:16834-17235:+ | gene-YJL151C_SA1 | rna-NM_001181584.1_SA1 | cds-NP_012384.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:127500-127901:- | gene-YJL151C_ThermosaccDry | rna-NM_001181584.1_ThermosaccDry | cds-NP_012384.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:134581-134982:- | gene-YJL151C_VR1 | rna-NM_001181584.1_VR1 | cds-NP_012384.1_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:114947-115348:- | gene-YJL151C_ZTW1 | rna-NM_001181584.1_ZTW1 | cds-NP_012384.1_ZTW1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:140055-140453:- | gene-YJL151C_Sparadoxus | rna-NM_001181584.1_Sparadoxus | cds-NP_012384.1_Sparadoxus | 87.5 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |