Gene name: SMX3
Reference locus (S288C): YPR182W
Gene biotype: protein_coding
Description: Small nuclear ribonucleoprotein F; Core Sm protein Sm F; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm F
Top 10 interactors (score): LSM2 (0.999); LSM8 (0.999); LEA1 (0.999); YHC1 (0.999); BRR2 (0.999); PRP8 (0.999); PRP4 (0.999); SMD1 (0.999); PRP3 (0.999); LSM3 (0.999); LSM7 (0.999); PRP31 (0.999); SME1 (0.999); LSM4 (0.999); MSL1 (0.999); SNP1 (0.999); SNU13 (0.999); CLF1 (0.999); SNT309 (0.999); LSM6 (0.999)
Homologues (species, bitscore): SNRPF (Homo sapiens, 87.4); Snrpf (Mus musculus, 87.4); snrpf (Danio rerio, 82.8); snrpf (Xenopus tropicalis, 60.8); SmF (Drosophila melanogaster, 87.8); snr-5 (Caenorhabditis elegans, 92.8); RUXF (Arabidopsis thaliana, 87.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:854470-854730:+ | gene-YPR182W_AKU4011 | rna-NM_001184279.1_AKU4011 | cds-NP_015508.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:42980-43240:- | gene-YPR182W_BG1 | rna-NM_001184279.1_BG1 | cds-NP_015508.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:935749-936009:+ | gene-YPR182W_Bruggeman | rna-NM_001184279.1_Bruggeman | cds-NP_015508.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:977810-978070:+ | gene-YPR182W_CAT1 | rna-NM_001184279.1_CAT1 | cds-NP_015508.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:859271-859531:+ | gene-YPR182W_CBS1585 | rna-NM_001184279.1_CBS1585 | cds-NP_015508.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:872816-873076:+ | gene-YPR182W_CBS436 | rna-NM_001184279.1_CBS436 | cds-NP_015508.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:861055-861315:+ | gene-YPR182W_CBS6412 | rna-NM_001184279.1_CBS6412 | cds-NP_015508.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:856199-856459:+ | gene-YPR182W_CBS6413 | rna-NM_001184279.1_CBS6413 | cds-NP_015508.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:900270-900530:+ | gene-YPR182W_CENPK1137D | rna-NM_001184279.1_CENPK1137D | cds-NP_015508.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1176222-1176482:+ | gene-YPR182W_EthanolRed | rna-NM_001184279.1_EthanolRed | cds-NP_015508.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:856295-856555:+ | gene-YPR182W_FaliES1 | rna-NM_001184279.1_FaliES1 | cds-NP_015508.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:43601-43861:+ | gene-YPR182W_JAY291 | rna-NM_001184279.1_JAY291 | cds-NP_015508.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:902986-903246:+ | gene-YPR182W_MUCL30387 | rna-NM_001184279.1_MUCL30387 | cds-NP_015508.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:877115-877375:+ | gene-YPR182W_MUCL30388 | rna-NM_001184279.1_MUCL30388 | cds-NP_015508.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:851471-851731:+ | gene-YPR182W_MUCL39482 | rna-NM_001184279.1_MUCL39482 | cds-NP_015508.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:915942-916202:+ | gene-YPR182W_MUCL42920 | rna-NM_001184279.1_MUCL42920 | cds-NP_015508.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:900177-900437:+ | gene-YPR182W_NCIM3186 | rna-NM_001184279.1_NCIM3186 | cds-NP_015508.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:859833-860093:+ | gene-YPR182W_NCYC1407 | rna-NM_001184279.1_NCYC1407 | cds-NP_015508.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:872125-872385:+ | gene-YPR182W_PE2H3 | rna-NM_001184279.1_PE2H3 | cds-NP_015508.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:871773-872033:+ | gene-YPR182W_PE2H4 | rna-NM_001184279.1_PE2H4 | cds-NP_015508.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:900194-900454:+ | gene-YPR182W_S288C | rna-NM_001184279.1_S288C | cds-NP_015508.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:25356-25616:- | gene-YPR182W_SA1 | rna-NM_001184279.1_SA1 | cds-NP_015508.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:855983-856243:+ | gene-YPR182W_ThermosaccDry | rna-NM_001184279.1_ThermosaccDry | cds-NP_015508.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:883780-884040:+ | gene-YPR182W_VR1 | rna-NM_001184279.1_VR1 | cds-NP_015508.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:858529-858789:+ | gene-YPR182W_ZTW1 | rna-NM_001184279.1_ZTW1 | cds-NP_015508.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:860605-860865:+ | gene-YPR182W_Sparadoxus | rna-NM_001184279.1_Sparadoxus | cds-NP_015508.1_Sparadoxus | 93.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |