Gene name: SMX2
Reference locus (S288C): YFL017W-A
Gene biotype: protein_coding
Description: Small nuclear ribonucleoprotein G; Core Sm protein Sm G; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx3p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm G
Top 10 interactors (score): BRR2 (0.999); CUS1 (0.999); PRP8 (0.999); LSM6 (0.999); SMD1 (0.999); RSE1 (0.999); SMB1 (0.999); PRP3 (0.999); SNP1 (0.999); LSM8 (0.999); SNU13 (0.999); LSM2 (0.999); SYF2 (0.999); PRP19 (0.999); YHC1 (0.999); LEA1 (0.999); SMX3 (0.999); MSL1 (0.999); SNU114 (0.999); LSM4 (0.999)
Homologues (species, bitscore): SNRPG (Homo sapiens, 78.2); Snrpg (Mus musculus, 78.2); SNRPG (Danio rerio, 75.9); snrpg (Xenopus tropicalis, 79.7); SmG (Drosophila melanogaster, 81.6); snr-7 (Caenorhabditis elegans, 74.3); SNRNP-G (Arabidopsis thaliana, 77.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:100145-100378:+ | gene-YFL017W-A_AKU4011 | rna-NM_001180864.1_AKU4011 | cds-NP_116636.1_AKU4011 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000203.1:6579-6812:- | gene-YFL017W-A_BG1 | rna-NM_001180864.1_BG1 | cds-NP_116636.1_BG1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:99496-99729:+ | gene-YFL017W-A_Bruggeman | rna-NM_001180864.1_Bruggeman | cds-NP_116636.1_Bruggeman | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:105084-105317:+ | gene-YFL017W-A_CAT1 | rna-NM_001180864.1_CAT1 | cds-NP_116636.1_CAT1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:100964-101197:+ | gene-YFL017W-A_CBS1585 | rna-NM_001180864.1_CBS1585 | cds-NP_116636.1_CBS1585 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:75144-75377:+ | gene-YFL017W-A_CBS436 | rna-NM_001180864.1_CBS436 | cds-NP_116636.1_CBS436 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:100696-100929:+ | gene-YFL017W-A_CBS6412 | rna-NM_001180864.1_CBS6412 | cds-NP_116636.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:103231-103464:+ | gene-YFL017W-A_CBS6413 | rna-NM_001180864.1_CBS6413 | cds-NP_116636.1_CBS6413 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:100028-100261:+ | gene-YFL017W-A_CENPK1137D | rna-NM_001180864.1_CENPK1137D | cds-NP_116636.1_CENPK1137D | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:99131-99364:+ | gene-YFL017W-A_EthanolRed | rna-NM_001180864.1_EthanolRed | cds-NP_116636.1_EthanolRed | 99.1 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:100771-101004:+ | gene-YFL017W-A_FaliES1 | rna-NM_001180864.1_FaliES1 | cds-NP_116636.1_FaliES1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000449.1:2251-2484:+ | gene-YFL017W-A_JAY291 | rna-NM_001180864.1_JAY291 | cds-NP_116636.1_JAY291 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:101112-101345:+ | gene-YFL017W-A_MUCL30387 | rna-NM_001180864.1_MUCL30387 | cds-NP_116636.1_MUCL30387 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:99048-99281:+ | gene-YFL017W-A_MUCL30388 | rna-NM_001180864.1_MUCL30388 | cds-NP_116636.1_MUCL30388 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:99343-99576:+ | gene-YFL017W-A_MUCL39482 | rna-NM_001180864.1_MUCL39482 | cds-NP_116636.1_MUCL39482 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:98685-98918:+ | gene-YFL017W-A_MUCL42920 | rna-NM_001180864.1_MUCL42920 | cds-NP_116636.1_MUCL42920 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:103698-103931:+ | gene-YFL017W-A_NCIM3186 | rna-NM_001180864.1_NCIM3186 | cds-NP_116636.1_NCIM3186 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:100433-100666:+ | gene-YFL017W-A_NCYC1407 | rna-NM_001180864.1_NCYC1407 | cds-NP_116636.1_NCYC1407 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:120282-120515:+ | gene-YFL017W-A_PE2H3 | rna-NM_001180864.1_PE2H3 | cds-NP_116636.1_PE2H3 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:119830-120063:+ | gene-YFL017W-A_PE2H4 | rna-NM_001180864.1_PE2H4 | cds-NP_116636.1_PE2H4 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:103699-103932:+ | gene-YFL017W-A_S288C | rna-NM_001180864.1_S288C | cds-NP_116636.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000105.1:16419-16652:+ | gene-YFL017W-A_SA1 | rna-NM_001180864.1_SA1 | cds-NP_116636.1_SA1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:99953-100186:+ | gene-YFL017W-A_ThermosaccDry | rna-NM_001180864.1_ThermosaccDry | cds-NP_116636.1_ThermosaccDry | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:108975-109208:+ | gene-YFL017W-A_VR1 | rna-NM_001180864.1_VR1 | cds-NP_116636.1_VR1 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:30392-30625:+ | gene-YFL017W-A_ZTW1 | rna-NM_001180864.1_ZTW1 | cds-NP_116636.1_ZTW1 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:124585-124818:+ | gene-YFL017W-A_Sparadoxus | rna-NM_001180864.1_Sparadoxus | cds-NP_116636.1_Sparadoxus | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |