Gene name: SMT3
Reference locus (S288C): YDR510W
Gene biotype: protein_coding
Description: Small ubiquitin-related modifier; Ubiquitin-like protein of the SUMO family; conjugated to lysine residues of target proteins; associates with transcriptionally active genes; regulates chromatid cohesion, chromosome segregation, APC-mediated proteolysis, DNA replication and septin ring dynamics; human homolog SUMO1 can complement yeast null mutant
Top 10 interactors (score): UBC9 (0.999); NFI1 (0.999); NUP2 (0.999); SRS2 (0.999); RNA1 (0.999); ULP2 (0.999); SIZ1 (0.999); MMS21 (0.999); YRB1 (0.999); UBA2 (0.999); ULP1 (0.999); AOS1 (0.999); POL30 (0.998); SMC5 (0.998); RAD52 (0.995); TOP2 (0.994); NSP1 (0.992); SMC6 (0.984); GSP1 (0.981); TOP1 (0.981)
Homologues (species, bitscore): SUMO1 (Homo sapiens, 85.9); Sumo1 (Mus musculus, 85.9); sumo1 (Danio rerio, 80.9); sumo1 (Xenopus tropicalis, 84.7); smt3 (Drosophila melanogaster, 76.3); smo-1 (Caenorhabditis elegans, 75.5); SUMO1 (Arabidopsis thaliana, 87.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1409409-1409714:+ | gene-YDR510W_AKU4011 | rna-NM_001180818.1_AKU4011 | cds-NP_010798.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:51061-51366:+ | gene-YDR510W_BG1 | rna-NM_001180818.1_BG1 | cds-NP_010798.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1440727-1441032:+ | gene-YDR510W_Bruggeman | rna-NM_001180818.1_Bruggeman | cds-NP_010798.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1417901-1418206:+ | gene-YDR510W_CAT1 | rna-NM_001180818.1_CAT1 | cds-NP_010798.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1404144-1404449:+ | gene-YDR510W_CBS1585 | rna-NM_001180818.1_CBS1585 | cds-NP_010798.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1423372-1423677:+ | gene-YDR510W_CBS436 | rna-NM_001180818.1_CBS436 | cds-NP_010798.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1399294-1399599:+ | gene-YDR510W_CBS6412 | rna-NM_001180818.1_CBS6412 | cds-NP_010798.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1422798-1423103:+ | gene-YDR510W_CBS6413 | rna-NM_001180818.1_CBS6413 | cds-NP_010798.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1468092-1468397:+ | gene-YDR510W_CENPK1137D | rna-NM_001180818.1_CENPK1137D | cds-NP_010798.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1412676-1412981:+ | gene-YDR510W_EthanolRed | rna-NM_001180818.1_EthanolRed | cds-NP_010798.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1416228-1416533:+ | gene-YDR510W_FaliES1 | rna-NM_001180818.1_FaliES1 | cds-NP_010798.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:114604-114909:+ | gene-YDR510W_JAY291 | rna-NM_001180818.1_JAY291 | cds-NP_010798.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1423817-1424122:+ | gene-YDR510W_MUCL30387 | rna-NM_001180818.1_MUCL30387 | cds-NP_010798.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1405251-1405556:+ | gene-YDR510W_MUCL30388 | rna-NM_001180818.1_MUCL30388 | cds-NP_010798.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1395633-1395938:+ | gene-YDR510W_MUCL39482 | rna-NM_001180818.1_MUCL39482 | cds-NP_010798.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1338294-1338599:+ | gene-YDR510W_MUCL42920 | rna-NM_001180818.1_MUCL42920 | cds-NP_010798.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1469323-1469628:+ | gene-YDR510W_NCIM3186 | rna-NM_001180818.1_NCIM3186 | cds-NP_010798.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1408923-1409228:+ | gene-YDR510W_NCYC1407 | rna-NM_001180818.1_NCYC1407 | cds-NP_010798.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1419871-1420176:+ | gene-YDR510W_PE2H3 | rna-NM_001180818.1_PE2H3 | cds-NP_010798.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1425337-1425642:+ | gene-YDR510W_PE2H4 | rna-NM_001180818.1_PE2H4 | cds-NP_010798.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1469400-1469705:+ | gene-YDR510W_S288C | rna-NM_001180818.1_S288C | cds-NP_010798.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:147412-147717:- | gene-YDR510W_SA1 | rna-NM_001180818.1_SA1 | cds-NP_010798.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1420450-1420755:+ | gene-YDR510W_ThermosaccDry | rna-NM_001180818.1_ThermosaccDry | cds-NP_010798.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1436242-1436547:+ | gene-YDR510W_VR1 | rna-NM_001180818.1_VR1 | cds-NP_010798.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:463111-463416:+ | gene-YDR510W_ZTW1 | rna-NM_001180818.1_ZTW1 | cds-NP_010798.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1429377-1429682:+ | gene-YDR510W_Sparadoxus | rna-NM_001180818.1_Sparadoxus | cds-NP_010798.1_Sparadoxus | 92.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |