Gene name: SMP3
Reference locus (S288C): YOR149C
Gene biotype: protein_coding
Description: GPI mannosyltransferase 4; Alpha 1,2-mannosyltransferase; involved in glycosyl phosphatidyl inositol (GPI) biosynthesis; required for addition of the fourth, side branching mannose to the GPI core structure
Top 10 interactors (score): GPI18 (0.981); GPI10 (0.976); GPI13 (0.976); GAA1 (0.962); GPI11 (0.953); GPI14 (0.947); SAP1 (0.893); PBN1 (0.858); ALG12 (0.844); ALG9 (0.824); SAP4 (0.813); GPI19 (0.799); MCD4 (0.781); GPI15 (0.776); GPI12 (0.758); GPI2 (0.754); SPT14 (0.749); ALG6 (0.736); LAS21 (0.714); GPI1 (0.711)
Homologues (species, bitscore): PIGZ (Homo sapiens, 137.9); Pigz (Mus musculus, 136.3); pigb (Danio rerio, 53.5); PIG-Z (Drosophila melanogaster, 92.4); T27F7.4 (Caenorhabditis elegans, 52.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:607366-608916:- | gene-YOR149C_AKU4011 | rna-NM_001183568.4_AKU4011 | cds-NP_014792.4_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:9211-10761:- | gene-YOR149C_BG1 | rna-NM_001183568.4_BG1 | cds-NP_014792.4_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:591528-593078:- | gene-YOR149C_Bruggeman | rna-NM_001183568.4_Bruggeman | cds-NP_014792.4_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:591547-593097:- | gene-YOR149C_CAT1 | rna-NM_001183568.4_CAT1 | cds-NP_014792.4_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:589841-591391:- | gene-YOR149C_CBS1585 | rna-NM_001183568.4_CBS1585 | cds-NP_014792.4_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:588250-589800:- | gene-YOR149C_CBS436 | rna-NM_001183568.4_CBS436 | cds-NP_014792.4_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:587479-589029:- | gene-YOR149C_CBS6412 | rna-NM_001183568.4_CBS6412 | cds-NP_014792.4_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:596249-597799:- | gene-YOR149C_CBS6413 | rna-NM_001183568.4_CBS6413 | cds-NP_014792.4_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:609594-611144:- | gene-YOR149C_CENPK1137D | rna-NM_001183568.4_CENPK1137D | cds-NP_014792.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:583678-585228:- | gene-YOR149C_EthanolRed | rna-NM_001183568.4_EthanolRed | cds-NP_014792.4_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:588531-590081:- | gene-YOR149C_FaliES1 | rna-NM_001183568.4_FaliES1 | cds-NP_014792.4_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:53469-55019:+ | gene-YOR149C_JAY291 | rna-NM_001183568.4_JAY291 | cds-NP_014792.4_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:596335-597885:- | gene-YOR149C_MUCL30387 | rna-NM_001183568.4_MUCL30387 | cds-NP_014792.4_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:603093-604643:- | gene-YOR149C_MUCL30388 | rna-NM_001183568.4_MUCL30388 | cds-NP_014792.4_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:597763-599313:- | gene-YOR149C_MUCL39482 | rna-NM_001183568.4_MUCL39482 | cds-NP_014792.4_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:607219-608769:- | gene-YOR149C_MUCL42920 | rna-NM_001183568.4_MUCL42920 | cds-NP_014792.4_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:609727-611277:- | gene-YOR149C_NCIM3186 | rna-NM_001183568.4_NCIM3186 | cds-NP_014792.4_NCIM3186 | 95.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:597886-599436:- | gene-YOR149C_NCYC1407 | rna-NM_001183568.4_NCYC1407 | cds-NP_014792.4_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:596392-597942:- | gene-YOR149C_PE2H3 | rna-NM_001183568.4_PE2H3 | cds-NP_014792.4_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:606769-608319:- | gene-YOR149C_PE2H4 | rna-NM_001183568.4_PE2H4 | cds-NP_014792.4_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:609838-611388:- | gene-YOR149C_S288C | rna-NM_001183568.4_S288C | cds-NP_014792.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:26378-27928:- | gene-YOR149C_SA1 | rna-NM_001183568.4_SA1 | cds-NP_014792.4_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:587714-589264:- | gene-YOR149C_ThermosaccDry | rna-NM_001183568.4_ThermosaccDry | cds-NP_014792.4_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:651392-652942:- | gene-YOR149C_VR1 | rna-NM_001183568.4_VR1 | cds-NP_014792.4_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:321160-322710:- | gene-YOR149C_ZTW1 | rna-NM_001183568.4_ZTW1 | cds-NP_014792.4_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:592802-594352:- | gene-YOR149C_Sparadoxus | rna-NM_001183568.4_Sparadoxus | cds-NP_014792.4_Sparadoxus | 85.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |