Gene name: SMP1
Reference locus (S288C): YBR182C
Gene biotype: protein_coding
Description: MADS-box transcription factor involved in osmotic stress response; SMP1 has a paralog, RLM1, that arose from the whole genome duplication; Belongs to the MEF2 family
Top 10 interactors (score): HOG1 (0.987); SEC4 (0.963); HOT1 (0.919); RIM101 (0.894); SKO1 (0.878); HDA1 (0.876); SLT2 (0.873); MSN2 (0.851); GAT3 (0.8); SMK1 (0.799); NRG1 (0.798); HOS3 (0.795); NHA1 (0.78); MEF2 (0.76); MSN4 (0.753); RCK2 (0.748); ARG80 (0.746); SSK1 (0.718); MSN1 (0.691); KSS1 (0.66)
Homologues (species, bitscore): MEF2C (Homo sapiens, 89.4); Mef2a (Mus musculus, 90.1); mef2cb (Danio rerio, 89.4); mef2a (Xenopus tropicalis, 87.8); Mef2 (Drosophila melanogaster, 89.0); mef-2 (Caenorhabditis elegans, 88.6); AGL15 (Arabidopsis thaliana, 75.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:576875-578233:- | gene-YBR182C_AKU4011 | rna-NM_001178530.3_AKU4011 | cds-NP_009741.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:566855-568213:- | gene-YBR182C_BG1 | rna-NM_001178530.3_BG1 | cds-NP_009741.3_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:382734-384092:- | gene-YBR182C_Bruggeman | rna-NM_001178530.3_Bruggeman | cds-NP_009741.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:582140-583498:- | gene-YBR182C_CAT1 | rna-NM_001178530.3_CAT1 | cds-NP_009741.3_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:568656-570014:- | gene-YBR182C_CBS1585 | rna-NM_001178530.3_CBS1585 | cds-NP_009741.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:576207-577565:- | gene-YBR182C_CBS436 | rna-NM_001178530.3_CBS436 | cds-NP_009741.3_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:665264-666622:- | gene-YBR182C_CBS6412 | rna-NM_001178530.3_CBS6412 | cds-NP_009741.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:574461-575819:- | gene-YBR182C_CBS6413 | rna-NM_001178530.3_CBS6413 | cds-NP_009741.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:587280-588638:- | gene-YBR182C_CENPK1137D | rna-NM_001178530.3_CENPK1137D | cds-NP_009741.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:702037-703395:- | gene-YBR182C_EthanolRed | rna-NM_001178530.3_EthanolRed | cds-NP_009741.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:592948-594306:- | gene-YBR182C_FaliES1 | rna-NM_001178530.3_FaliES1 | cds-NP_009741.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000104.1:11943-13301:+ | gene-YBR182C_JAY291 | rna-NM_001178530.3_JAY291 | cds-NP_009741.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:581415-582773:- | gene-YBR182C_MUCL30387 | rna-NM_001178530.3_MUCL30387 | cds-NP_009741.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:598490-599848:- | gene-YBR182C_MUCL30388 | rna-NM_001178530.3_MUCL30388 | cds-NP_009741.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:567029-568387:- | gene-YBR182C_MUCL39482 | rna-NM_001178530.3_MUCL39482 | cds-NP_009741.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:576455-577813:- | gene-YBR182C_MUCL42920 | rna-NM_001178530.3_MUCL42920 | cds-NP_009741.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:593303-594661:- | gene-YBR182C_NCIM3186 | rna-NM_001178530.3_NCIM3186 | cds-NP_009741.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:569137-570495:- | gene-YBR182C_NCYC1407 | rna-NM_001178530.3_NCYC1407 | cds-NP_009741.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:581727-583085:- | gene-YBR182C_PE2H3 | rna-NM_001178530.3_PE2H3 | cds-NP_009741.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:579403-580761:- | gene-YBR182C_PE2H4 | rna-NM_001178530.3_PE2H4 | cds-NP_009741.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:593506-594864:- | gene-YBR182C_S288C | rna-NM_001178530.3_S288C | cds-NP_009741.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000080.1:1202-2560:- | gene-YBR182C_SA1 | rna-NM_001178530.3_SA1 | cds-NP_009741.3_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:591958-593316:- | gene-YBR182C_ThermosaccDry | rna-NM_001178530.3_ThermosaccDry | cds-NP_009741.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:573127-574485:- | gene-YBR182C_VR1 | rna-NM_001178530.3_VR1 | cds-NP_009741.3_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:566576-567934:- | gene-YBR182C_ZTW1 | rna-NM_001178530.3_ZTW1 | cds-NP_009741.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:608293-609651:- | gene-YBR182C_Sparadoxus | rna-NM_001178530.3_Sparadoxus | cds-NP_009741.3_Sparadoxus | 85.7 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |