Gene name: SMM1
Reference locus (S288C): YNR015W
Gene biotype: protein_coding
Description: tRNA-dihydrouridine(20) synthase [NAD(P)+]; Dihydrouridine synthase; member of a family of dihydrouridine synthases including Dus1p, Smm1p, Dus3p, and Dus4p; modifies uridine residues at position 20 of cytoplasmic tRNAs
Top 10 interactors (score): TRM1 (0.973); MOD5 (0.931); TRM5 (0.92); TAN1 (0.885); PUS1 (0.87); BUD13 (0.858); ITT1 (0.839); GCD14 (0.818); TRM112 (0.789); DEG1 (0.783); TRM10 (0.765); TRM11 (0.763); ERG27 (0.739); FMN1 (0.713); GCD10 (0.711); GUS1 (0.699); TRM8 (0.693); YHR020W (0.691); ACP1 (0.68); SUA5 (0.669)
Homologues (species, bitscore): DUS2 (Homo sapiens, 199.5); Dus2 (Mus musculus, 196.8); dus2 (Danio rerio, 207.6); dus2 (Xenopus tropicalis, 189.1); CG1434 (Drosophila melanogaster, 179.1); Y54E5A.6 (Caenorhabditis elegans, 172.6); AT3G49640 (Arabidopsis thaliana, 163.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:637002-638156:+ | gene-YNR015W_AKU4011 | rna-NM_001183192.1_AKU4011 | cds-NP_014412.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:544917-546071:+ | gene-YNR015W_BG1 | rna-NM_001183192.1_BG1 | cds-NP_014412.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:654465-655619:+ | gene-YNR015W_Bruggeman | rna-NM_001183192.1_Bruggeman | cds-NP_014412.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:688691-689845:+ | gene-YNR015W_CAT1 | rna-NM_001183192.1_CAT1 | cds-NP_014412.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:642798-643952:+ | gene-YNR015W_CBS1585 | rna-NM_001183192.1_CBS1585 | cds-NP_014412.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:704461-705615:+ | gene-YNR015W_CBS436 | rna-NM_001183192.1_CBS436 | cds-NP_014412.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:631993-633147:+ | gene-YNR015W_CBS6412 | rna-NM_001183192.1_CBS6412 | cds-NP_014412.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:633692-634846:+ | gene-YNR015W_CBS6413 | rna-NM_001183192.1_CBS6413 | cds-NP_014412.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:647073-648227:+ | gene-YNR015W_CENPK1137D | rna-NM_001183192.1_CENPK1137D | cds-NP_014412.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:638740-639894:+ | gene-YNR015W_EthanolRed | rna-NM_001183192.1_EthanolRed | cds-NP_014412.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:629937-631091:+ | gene-YNR015W_FaliES1 | rna-NM_001183192.1_FaliES1 | cds-NP_014412.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:71679-72833:- | gene-YNR015W_JAY291 | rna-NM_001183192.1_JAY291 | cds-NP_014412.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:652209-653363:+ | gene-YNR015W_MUCL30387 | rna-NM_001183192.1_MUCL30387 | cds-NP_014412.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:693052-694206:+ | gene-YNR015W_MUCL30388 | rna-NM_001183192.1_MUCL30388 | cds-NP_014412.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:634302-635456:+ | gene-YNR015W_MUCL39482 | rna-NM_001183192.1_MUCL39482 | cds-NP_014412.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:638459-639613:+ | gene-YNR015W_MUCL42920 | rna-NM_001183192.1_MUCL42920 | cds-NP_014412.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:653356-654510:+ | gene-YNR015W_NCIM3186 | rna-NM_001183192.1_NCIM3186 | cds-NP_014412.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:636808-637962:+ | gene-YNR015W_NCYC1407 | rna-NM_001183192.1_NCYC1407 | cds-NP_014412.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:637870-639024:+ | gene-YNR015W_PE2H3 | rna-NM_001183192.1_PE2H3 | cds-NP_014412.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:639188-640342:+ | gene-YNR015W_PE2H4 | rna-NM_001183192.1_PE2H4 | cds-NP_014412.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:653387-654541:+ | gene-YNR015W_S288C | rna-NM_001183192.1_S288C | cds-NP_014412.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000068.1:51096-52250:+ | gene-YNR015W_SA1 | rna-NM_001183192.1_SA1 | cds-NP_014412.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:630277-631431:+ | gene-YNR015W_ThermosaccDry | rna-NM_001183192.1_ThermosaccDry | cds-NP_014412.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:672213-673367:+ | gene-YNR015W_VR1 | rna-NM_001183192.1_VR1 | cds-NP_014412.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:539693-540847:+ | gene-YNR015W_ZTW1 | rna-NM_001183192.1_ZTW1 | cds-NP_014412.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:644370-645524:+ | gene-YNR015W_Sparadoxus | rna-NM_001183192.1_Sparadoxus | cds-NP_014412.1_Sparadoxus | 90.7 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |