Gene name: SMF3
Reference locus (S288C): YLR034C
Gene biotype: protein_coding
Description: Iron transporter SMF3; Putative divalent metal ion transporter involved in iron homeostasis; transcriptionally regulated by metal ions; member of the Nramp family of metal transport proteins; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): FET5 (0.956); MRS4 (0.946); CCC1 (0.93); FET3 (0.93); FTR1 (0.922); FTH1 (0.886); CCC2 (0.877); MRS3 (0.869); AFT1 (0.857); AFT2 (0.82); COT1 (0.813); FET4 (0.806); ATX1 (0.787); MMT1 (0.785); TIS11 (0.756); SMX3 (0.753); SIT1 (0.735); FRE1 (0.733); ARN1 (0.727); CTR2 (0.718)
Homologues (species, bitscore): SLC11A2 (Homo sapiens, 191.0); Slc11a2 (Mus musculus, 189.9); slc11a2 (Danio rerio, 63.5); slc11a1 (Xenopus tropicalis, 184.1); Mvl (Drosophila melanogaster, 188.7); smf-1 (Caenorhabditis elegans, 179.5); NRAMP1 (Arabidopsis thaliana, 238.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:198447-199868:- | gene-YLR034C_AKU4011 | rna-NM_001181921.2_AKU4011 | cds-NP_013134.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:161727-163148:- | gene-YLR034C_BG1 | rna-NM_001181921.2_BG1 | cds-NP_013134.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:208839-210260:- | gene-YLR034C_Bruggeman | rna-NM_001181921.2_Bruggeman | cds-NP_013134.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:209163-210584:- | gene-YLR034C_CAT1 | rna-NM_001181921.2_CAT1 | cds-NP_013134.1_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:206073-207494:- | gene-YLR034C_CBS1585 | rna-NM_001181921.2_CBS1585 | cds-NP_013134.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:196703-198124:- | gene-YLR034C_CBS436 | rna-NM_001181921.2_CBS436 | cds-NP_013134.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:204482-205903:- | gene-YLR034C_CBS6412 | rna-NM_001181921.2_CBS6412 | cds-NP_013134.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:206334-207755:- | gene-YLR034C_CBS6413 | rna-NM_001181921.2_CBS6413 | cds-NP_013134.1_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:195745-197166:- | gene-YLR034C_CENPK1137D | rna-NM_001181921.2_CENPK1137D | cds-NP_013134.1_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:198458-199879:- | gene-YLR034C_EthanolRed | rna-NM_001181921.2_EthanolRed | cds-NP_013134.1_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:198367-199788:- | gene-YLR034C_FaliES1 | rna-NM_001181921.2_FaliES1 | cds-NP_013134.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000431.1:42221-43642:- | gene-YLR034C_JAY291 | rna-NM_001181921.2_JAY291 | cds-NP_013134.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:206192-207613:- | gene-YLR034C_MUCL30387 | rna-NM_001181921.2_MUCL30387 | cds-NP_013134.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:213195-214616:- | gene-YLR034C_MUCL30388 | rna-NM_001181921.2_MUCL30388 | cds-NP_013134.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:206568-207989:- | gene-YLR034C_MUCL39482 | rna-NM_001181921.2_MUCL39482 | cds-NP_013134.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:206471-207892:- | gene-YLR034C_MUCL42920 | rna-NM_001181921.2_MUCL42920 | cds-NP_013134.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:210486-211907:- | gene-YLR034C_NCIM3186 | rna-NM_001181921.2_NCIM3186 | cds-NP_013134.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:198627-200048:- | gene-YLR034C_NCYC1407 | rna-NM_001181921.2_NCYC1407 | cds-NP_013134.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:204501-205922:- | gene-YLR034C_PE2H3 | rna-NM_001181921.2_PE2H3 | cds-NP_013134.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:204242-205663:- | gene-YLR034C_PE2H4 | rna-NM_001181921.2_PE2H4 | cds-NP_013134.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:210512-211933:- | gene-YLR034C_S288C | rna-NM_001181921.2_S288C | cds-NP_013134.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:42349-43770:- | gene-YLR034C_SA1 | rna-NM_001181921.2_SA1 | cds-NP_013134.1_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:198533-199954:- | gene-YLR034C_ThermosaccDry | rna-NM_001181921.2_ThermosaccDry | cds-NP_013134.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:211951-213372:- | gene-YLR034C_VR1 | rna-NM_001181921.2_VR1 | cds-NP_013134.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:197899-199320:- | gene-YLR034C_ZTW1 | rna-NM_001181921.2_ZTW1 | cds-NP_013134.1_ZTW1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:206689-208110:- | gene-YLR034C_Sparadoxus | rna-NM_001181921.2_Sparadoxus | cds-NP_013134.1_Sparadoxus | 90.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |