Gene name: SMF1
Reference locus (S288C): YOL122C
Gene biotype: protein_coding
Description: Manganese transporter SMF1; Divalent metal ion transporter; broad specificity for di-valent and tri-valent metals; post-translationally regulated by levels of metal ions; member of the Nramp family of metal transport proteins
Top 10 interactors (score): BSD2 (0.965); FET4 (0.917); CDC1 (0.916); FTR1 (0.884); PMR1 (0.866); FET3 (0.864); CCC1 (0.841); RSP5 (0.832); ECM21 (0.817); TRE1 (0.817); ZRT2 (0.814); ZRT1 (0.81); ZRC1 (0.804); COT1 (0.792); MRS3 (0.771); SMX3 (0.766); PHO84 (0.758); FUR4 (0.749); PPN1 (0.745); CTR3 (0.739)
Homologues (species, bitscore): SLC11A2 (Homo sapiens, 201.1); Slc11a2 (Mus musculus, 202.2); slc11a2 (Danio rerio, 60.8); slc11a1 (Xenopus tropicalis, 197.6); Mvl (Drosophila melanogaster, 196.8); smf-3 (Caenorhabditis elegans, 177.2); NRAMP1 (Arabidopsis thaliana, 227.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:78344-80071:- | gene-YOL122C_AKU4011 | rna-NM_001183376.1_AKU4011 | cds-NP_014519.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:43972-45699:- | gene-YOL122C_BG1 | rna-NM_001183376.1_BG1 | cds-NP_014519.1_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:79619-81346:- | gene-YOL122C_Bruggeman | rna-NM_001183376.1_Bruggeman | cds-NP_014519.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:78582-80309:- | gene-YOL122C_CAT1 | rna-NM_001183376.1_CAT1 | cds-NP_014519.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:72821-74548:- | gene-YOL122C_CBS1585 | rna-NM_001183376.1_CBS1585 | cds-NP_014519.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:78676-80403:- | gene-YOL122C_CBS436 | rna-NM_001183376.1_CBS436 | cds-NP_014519.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:72684-74411:- | gene-YOL122C_CBS6412 | rna-NM_001183376.1_CBS6412 | cds-NP_014519.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:79152-80879:- | gene-YOL122C_CBS6413 | rna-NM_001183376.1_CBS6413 | cds-NP_014519.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:89589-91316:- | gene-YOL122C_CENPK1137D | rna-NM_001183376.1_CENPK1137D | cds-NP_014519.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:76595-78322:- | gene-YOL122C_EthanolRed | rna-NM_001183376.1_EthanolRed | cds-NP_014519.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:78624-80351:- | gene-YOL122C_FaliES1 | rna-NM_001183376.1_FaliES1 | cds-NP_014519.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:2193-3920:+ | gene-YOL122C_JAY291 | rna-NM_001183376.1_JAY291 | cds-NP_014519.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:84260-85987:- | gene-YOL122C_MUCL30387 | rna-NM_001183376.1_MUCL30387 | cds-NP_014519.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:87259-88986:- | gene-YOL122C_MUCL30388 | rna-NM_001183376.1_MUCL30388 | cds-NP_014519.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:80759-82486:- | gene-YOL122C_MUCL39482 | rna-NM_001183376.1_MUCL39482 | cds-NP_014519.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:96638-98365:- | gene-YOL122C_MUCL42920 | rna-NM_001183376.1_MUCL42920 | cds-NP_014519.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:89581-91308:- | gene-YOL122C_NCIM3186 | rna-NM_001183376.1_NCIM3186 | cds-NP_014519.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:86794-88521:- | gene-YOL122C_NCYC1407 | rna-NM_001183376.1_NCYC1407 | cds-NP_014519.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:65231-66958:- | gene-YOL122C_PE2H3 | rna-NM_001183376.1_PE2H3 | cds-NP_014519.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:82179-83906:- | gene-YOL122C_PE2H4 | rna-NM_001183376.1_PE2H4 | cds-NP_014519.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:89692-91419:- | gene-YOL122C_S288C | rna-NM_001183376.1_S288C | cds-NP_014519.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:63121-64848:- | gene-YOL122C_SA1 | rna-NM_001183376.1_SA1 | cds-NP_014519.1_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:77762-79489:- | gene-YOL122C_ThermosaccDry | rna-NM_001183376.1_ThermosaccDry | cds-NP_014519.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:78426-80153:- | gene-YOL122C_VR1 | rna-NM_001183376.1_VR1 | cds-NP_014519.1_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:77514-79241:- | gene-YOL122C_ZTW1 | rna-NM_001183376.1_ZTW1 | cds-NP_014519.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:80252-81997:- | gene-YOL122C_Sparadoxus | rna-NM_001183376.1_Sparadoxus | cds-NP_014519.1_Sparadoxus | 86.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |