Gene name: SME1
Reference locus (S288C): YOR159C
Gene biotype: protein_coding
Description: Small nuclear ribonucleoprotein E; Core Sm protein Sm E; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm E
Top 10 interactors (score): SNU66 (0.999); PRP28 (0.999); MSL1 (0.999); LSM4 (0.999); SNP1 (0.999); CLF1 (0.999); SMD1 (0.999); LSM6 (0.999); PRP4 (0.999); PRP11 (0.999); LSM3 (0.999); PRP21 (0.999); RDS3 (0.999); PRP3 (0.999); PRP31 (0.999); LSM7 (0.999); YSF3 (0.999); SMD2 (0.999); PRP6 (0.999); CEF1 (0.999)
Homologues (species, bitscore): SNRPE (Homo sapiens, 93.2); Snrpe (Mus musculus, 93.2); snrpe (Danio rerio, 96.7); snrpe (Xenopus tropicalis, 94.4); SmE (Drosophila melanogaster, 92.4); snr-6 (Caenorhabditis elegans, 94.7); AT4G30330 (Arabidopsis thaliana, 96.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:630918-631202:- | gene-YOR159C_AKU4011 | rna-NM_001183578.3_AKU4011 | cds-NP_014802.3_AKU4011 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:32674-32958:- | gene-YOR159C_BG1 | rna-NM_001183578.3_BG1 | cds-NP_014802.3_BG1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:614991-615275:- | gene-YOR159C_Bruggeman | rna-NM_001183578.3_Bruggeman | cds-NP_014802.3_Bruggeman | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:615009-615293:- | gene-YOR159C_CAT1 | rna-NM_001183578.3_CAT1 | cds-NP_014802.3_CAT1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:613413-613697:- | gene-YOR159C_CBS1585 | rna-NM_001183578.3_CBS1585 | cds-NP_014802.3_CBS1585 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:611707-611991:- | gene-YOR159C_CBS436 | rna-NM_001183578.3_CBS436 | cds-NP_014802.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:611025-611309:- | gene-YOR159C_CBS6412 | rna-NM_001183578.3_CBS6412 | cds-NP_014802.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:619706-619990:- | gene-YOR159C_CBS6413 | rna-NM_001183578.3_CBS6413 | cds-NP_014802.3_CBS6413 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:633041-633325:- | gene-YOR159C_CENPK1137D | rna-NM_001183578.3_CENPK1137D | cds-NP_014802.3_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:607120-607404:- | gene-YOR159C_EthanolRed | rna-NM_001183578.3_EthanolRed | cds-NP_014802.3_EthanolRed | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:611973-612257:- | gene-YOR159C_FaliES1 | rna-NM_001183578.3_FaliES1 | cds-NP_014802.3_FaliES1 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:31281-31565:+ | gene-YOR159C_JAY291 | rna-NM_001183578.3_JAY291 | cds-NP_014802.3_JAY291 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:619798-620082:- | gene-YOR159C_MUCL30387 | rna-NM_001183578.3_MUCL30387 | cds-NP_014802.3_MUCL30387 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:626561-626845:- | gene-YOR159C_MUCL30388 | rna-NM_001183578.3_MUCL30388 | cds-NP_014802.3_MUCL30388 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:621254-621538:- | gene-YOR159C_MUCL39482 | rna-NM_001183578.3_MUCL39482 | cds-NP_014802.3_MUCL39482 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:630675-630959:- | gene-YOR159C_MUCL42920 | rna-NM_001183578.3_MUCL42920 | cds-NP_014802.3_MUCL42920 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:633171-633455:- | gene-YOR159C_NCIM3186 | rna-NM_001183578.3_NCIM3186 | cds-NP_014802.3_NCIM3186 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:621340-621624:- | gene-YOR159C_NCYC1407 | rna-NM_001183578.3_NCYC1407 | cds-NP_014802.3_NCYC1407 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:619851-620135:- | gene-YOR159C_PE2H3 | rna-NM_001183578.3_PE2H3 | cds-NP_014802.3_PE2H3 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:630228-630512:- | gene-YOR159C_PE2H4 | rna-NM_001183578.3_PE2H4 | cds-NP_014802.3_PE2H4 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:633282-633566:- | gene-YOR159C_S288C | rna-NM_001183578.3_S288C | cds-NP_014802.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:49837-50121:- | gene-YOR159C_SA1 | rna-NM_001183578.3_SA1 | cds-NP_014802.3_SA1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:611156-611440:- | gene-YOR159C_ThermosaccDry | rna-NM_001183578.3_ThermosaccDry | cds-NP_014802.3_ThermosaccDry | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:674854-675138:- | gene-YOR159C_VR1 | rna-NM_001183578.3_VR1 | cds-NP_014802.3_VR1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:344607-344891:- | gene-YOR159C_ZTW1 | rna-NM_001183578.3_ZTW1 | cds-NP_014802.3_ZTW1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:616292-616576:- | gene-YOR159C_Sparadoxus | rna-NM_001183578.3_Sparadoxus | cds-NP_014802.3_Sparadoxus | 94.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |