Gene name: SMD3
Reference locus (S288C): YLR147C
Gene biotype: protein_coding
Description: Small nuclear ribonucleoprotein Sm D3; Core Sm protein Sm D3; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D3
Top 10 interactors (score): SMX2 (0.999); CWC2 (0.999); SMX3 (0.999); RSE1 (0.999); SNU114 (0.999); LSM8 (0.999); LSM2 (0.999); PRP9 (0.999); PRP19 (0.999); YHC1 (0.999); LEA1 (0.999); SNU23 (0.999); HSH155 (0.999); SMB1 (0.999); DIB1 (0.999); CEF1 (0.999); PRP6 (0.999); SMD2 (0.999); SNU66 (0.999); LSM5 (0.999)
Homologues (species, bitscore): SNRPD3 (Homo sapiens, 108.2); Snrpd3 (Mus musculus, 108.2); snrpd3l (Danio rerio, 108.6); snrpd3 (Xenopus tropicalis, 104.8); SmD3 (Drosophila melanogaster, 107.8); snr-1 (Caenorhabditis elegans, 105.5); AT1G20580 (Arabidopsis thaliana, 109.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:416638-416943:- | gene-YLR147C_AKU4011 | rna-NM_001182034.1_AKU4011 | cds-NP_013248.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:380409-380714:- | gene-YLR147C_BG1 | rna-NM_001182034.1_BG1 | cds-NP_013248.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:428534-428839:- | gene-YLR147C_Bruggeman | rna-NM_001182034.1_Bruggeman | cds-NP_013248.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:427919-428224:- | gene-YLR147C_CAT1 | rna-NM_001182034.1_CAT1 | cds-NP_013248.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:423781-424086:- | gene-YLR147C_CBS1585 | rna-NM_001182034.1_CBS1585 | cds-NP_013248.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:414018-414323:- | gene-YLR147C_CBS436 | rna-NM_001182034.1_CBS436 | cds-NP_013248.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:422199-422504:- | gene-YLR147C_CBS6412 | rna-NM_001182034.1_CBS6412 | cds-NP_013248.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:424046-424351:- | gene-YLR147C_CBS6413 | rna-NM_001182034.1_CBS6413 | cds-NP_013248.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:419176-419481:- | gene-YLR147C_CENPK1137D | rna-NM_001182034.1_CENPK1137D | cds-NP_013248.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:416839-417144:- | gene-YLR147C_EthanolRed | rna-NM_001182034.1_EthanolRed | cds-NP_013248.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:416350-416655:- | gene-YLR147C_FaliES1 | rna-NM_001182034.1_FaliES1 | cds-NP_013248.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000061.1:23010-23315:- | gene-YLR147C_JAY291 | rna-NM_001182034.1_JAY291 | cds-NP_013248.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:428539-428844:- | gene-YLR147C_MUCL30387 | rna-NM_001182034.1_MUCL30387 | cds-NP_013248.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:433339-433644:- | gene-YLR147C_MUCL30388 | rna-NM_001182034.1_MUCL30388 | cds-NP_013248.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:424290-424595:- | gene-YLR147C_MUCL39482 | rna-NM_001182034.1_MUCL39482 | cds-NP_013248.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:424444-424749:- | gene-YLR147C_MUCL42920 | rna-NM_001182034.1_MUCL42920 | cds-NP_013248.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:434132-434437:- | gene-YLR147C_NCIM3186 | rna-NM_001182034.1_NCIM3186 | cds-NP_013248.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:416562-416867:- | gene-YLR147C_NCYC1407 | rna-NM_001182034.1_NCYC1407 | cds-NP_013248.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:422119-422424:- | gene-YLR147C_PE2H3 | rna-NM_001182034.1_PE2H3 | cds-NP_013248.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:421860-422165:- | gene-YLR147C_PE2H4 | rna-NM_001182034.1_PE2H4 | cds-NP_013248.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:434158-434463:- | gene-YLR147C_S288C | rna-NM_001182034.1_S288C | cds-NP_013248.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000055.1:60055-60360:- | gene-YLR147C_SA1 | rna-NM_001182034.1_SA1 | cds-NP_013248.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:417560-417865:- | gene-YLR147C_ThermosaccDry | rna-NM_001182034.1_ThermosaccDry | cds-NP_013248.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:430260-430565:- | gene-YLR147C_VR1 | rna-NM_001182034.1_VR1 | cds-NP_013248.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:415346-415651:- | gene-YLR147C_ZTW1 | rna-NM_001182034.1_ZTW1 | cds-NP_013248.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:425505-425810:- | gene-YLR147C_Sparadoxus | rna-NM_001182034.1_Sparadoxus | cds-NP_013248.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |