Gene name: SMD2
Reference locus (S288C): YLR275W
Gene biotype: protein_coding
Description: Small nuclear ribonucleoprotein Sm D2; Core Sm protein Sm D2; part of heteroheptameric complex (with Smb1p, Smd1p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D2
Top 10 interactors (score): PRP19 (0.999); LSM2 (0.999); LSM8 (0.999); LEA1 (0.999); YHC1 (0.999); SNU114 (0.999); SMX3 (0.999); CWC2 (0.999); SMX2 (0.999); RSE1 (0.999); PRP6 (0.999); CEF1 (0.999); PRP28 (0.999); SNU66 (0.999); HSH155 (0.999); SMB1 (0.999); SMD3 (0.999); LSM5 (0.999); PRP9 (0.999); CUS1 (0.999)
Homologues (species, bitscore): SNRPD2 (Homo sapiens, 126.3); Snrpd2 (Mus musculus, 126.3); snrpd2 (Danio rerio, 126.3); snrpd2 (Xenopus tropicalis, 126.3); SmD2 (Drosophila melanogaster, 122.9); snr-4 (Caenorhabditis elegans, 115.5); AT2G47640 (Arabidopsis thaliana, 109.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:643237-643659:+ | gene-YLR275W_AKU4011 | rna-NM_001182162.1_AKU4011 | cds-NP_013377.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:89023-89445:- | gene-YLR275W_BG1 | rna-NM_001182162.1_BG1 | cds-NP_013377.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:678178-678600:+ | gene-YLR275W_Bruggeman | rna-NM_001182162.1_Bruggeman | cds-NP_013377.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:677002-677424:+ | gene-YLR275W_CAT1 | rna-NM_001182162.1_CAT1 | cds-NP_013377.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:678136-678558:+ | gene-YLR275W_CBS1585 | rna-NM_001182162.1_CBS1585 | cds-NP_013377.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:662764-663186:+ | gene-YLR275W_CBS436 | rna-NM_001182162.1_CBS436 | cds-NP_013377.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:640770-641192:+ | gene-YLR275W_CBS6412 | rna-NM_001182162.1_CBS6412 | cds-NP_013377.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:678778-679200:+ | gene-YLR275W_CBS6413 | rna-NM_001182162.1_CBS6413 | cds-NP_013377.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:679010-679432:+ | gene-YLR275W_CENPK1137D | rna-NM_001182162.1_CENPK1137D | cds-NP_013377.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:636697-637119:+ | gene-YLR275W_EthanolRed | rna-NM_001182162.1_EthanolRed | cds-NP_013377.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:665686-666108:+ | gene-YLR275W_FaliES1 | rna-NM_001182162.1_FaliES1 | cds-NP_013377.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000359.1:39641-40062:- | gene-YLR275W_JAY291 | rna-NM_001182162.1_JAY291 | cds-NP_013377.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:678307-678729:+ | gene-YLR275W_MUCL30387 | rna-NM_001182162.1_MUCL30387 | cds-NP_013377.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:683664-684086:+ | gene-YLR275W_MUCL30388 | rna-NM_001182162.1_MUCL30388 | cds-NP_013377.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:679363-679785:+ | gene-YLR275W_MUCL39482 | rna-NM_001182162.1_MUCL39482 | cds-NP_013377.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:674563-674985:+ | gene-YLR275W_MUCL42920 | rna-NM_001182162.1_MUCL42920 | cds-NP_013377.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:694352-694774:+ | gene-YLR275W_NCIM3186 | rna-NM_001182162.1_NCIM3186 | cds-NP_013377.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:666621-667043:+ | gene-YLR275W_NCYC1407 | rna-NM_001182162.1_NCYC1407 | cds-NP_013377.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:676522-676943:+ | gene-YLR275W_PE2H3 | rna-NM_001182162.1_PE2H3 | cds-NP_013377.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:676266-676687:+ | gene-YLR275W_PE2H4 | rna-NM_001182162.1_PE2H4 | cds-NP_013377.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:694378-694800:+ | gene-YLR275W_S288C | rna-NM_001182162.1_S288C | cds-NP_013377.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:89829-90251:- | gene-YLR275W_SA1 | rna-NM_001182162.1_SA1 | cds-NP_013377.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:667629-668051:+ | gene-YLR275W_ThermosaccDry | rna-NM_001182162.1_ThermosaccDry | cds-NP_013377.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:679556-679978:+ | gene-YLR275W_VR1 | rna-NM_001182162.1_VR1 | cds-NP_013377.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:5992-6414:+ | gene-YLR275W_ZTW1 | rna-NM_001182162.1_ZTW1 | cds-NP_013377.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:653708-654133:+ | gene-YLR275W_Sparadoxus | rna-NM_001182162.1_Sparadoxus | cds-NP_013377.1_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |